English
Related papers

Related papers: Central Dogma Transformer: Towards Mechanism-Orien…

200 papers

The recent success of Transformer in natural language processing has sparked its use in various domains. In offline reinforcement learning (RL), Decision Transformer (DT) is emerging as a promising model based on Transformer. However, we…

Machine Learning · Computer Science 2024-05-31 Jeonghye Kim , Suyoung Lee , Woojun Kim , Youngchul Sung

Connectionist Temporal Classification (CTC) is a widely used approach for automatic speech recognition (ASR) that performs conditionally independent monotonic alignment. However for translation, CTC exhibits clear limitations due to the…

Computation and Language · Computer Science 2022-10-12 Brian Yan , Siddharth Dalmia , Yosuke Higuchi , Graham Neubig , Florian Metze , Alan W Black , Shinji Watanabe

As key elements within the central dogma, DNA, RNA, and proteins play crucial roles in maintaining life by guaranteeing accurate genetic expression and implementation. Although research on these molecules has profoundly impacted fields like…

The central dogma of molecular biology, formulated more than five decades ago, compartmentalized information exchange in the cell into the DNA, RNA and protein domains. This formalization has served as an implicit thematic distinguisher for…

Quantitative Methods · Quantitative Biology 2013-10-09 Sepehr Ehsani

Designing a single neural network architecture that performs competitively across a range of molecule property prediction tasks remains largely an open challenge, and its solution may unlock a widespread use of deep learning in the drug…

Machine Learning · Computer Science 2021-02-10 Łukasz Maziarka , Tomasz Danel , Sławomir Mucha , Krzysztof Rataj , Jacek Tabor , Stanisław Jastrzębski

Continual Test-Time Adaptation (CTTA) is proposed to migrate a source pre-trained model to continually changing target distributions, addressing real-world dynamism. Existing CTTA methods mainly rely on entropy minimization or…

Computer Vision and Pattern Recognition · Computer Science 2024-03-28 Jiaming Liu , Ran Xu , Senqiao Yang , Renrui Zhang , Qizhe Zhang , Zehui Chen , Yandong Guo , Shanghang Zhang

Recent advances in non-invasive EEG technology have broadened its application in emotion recognition, yielding a multitude of related datasets. Yet, deep learning models struggle to generalize across these datasets due to variations in…

Signal Processing · Electrical Eng. & Systems 2024-06-13 Yuan Liao , Yuhong Zhang , Shenghuan Wang , Xiruo Zhang , Yiling Zhang , Wei Chen , Yuzhe Gu , Liya Huang

We present CpT: Convolutional point Transformer - a novel deep learning architecture for dealing with the unstructured nature of 3D point cloud data. CpT is an improvement over existing attention-based Convolutions Neural Networks as well…

Computer Vision and Pattern Recognition · Computer Science 2021-11-23 Chaitanya Kaul , Joshua Mitton , Hang Dai , Roderick Murray-Smith

Data sparsity is an important issue for click-through rate (CTR) prediction, particularly when user-item interactions is too sparse to learn a reliable model. Recently, many works on cross-domain CTR (CDCTR) prediction have been developed…

Information Retrieval · Computer Science 2023-05-10 Xu Chen , Zida Cheng , Shuai Xiao , Xiaoyi Zeng , Weilin Huang

Emotion recognition is a fundamental component of next-generation human-computer interaction (HCI), enabling machines to perceive, understand, and respond to users' affective states. However, existing systems often rely on single-modality…

Computer Vision and Pattern Recognition · Computer Science 2026-01-22 Ziwen Zhong , Zhitao Shu , Yue Zhao

Modern machine learning models for computer vision exceed humans in accuracy on specific visual recognition tasks, notably on datasets like ImageNet. However, high accuracy can be achieved in many ways. The particular decision function…

Computer Vision and Pattern Recognition · Computer Science 2021-07-02 Shikhar Tuli , Ishita Dasgupta , Erin Grant , Thomas L. Griffiths

Despite the recent progress in speech emotion recognition (SER), state-of-the-art systems are unable to achieve improved performance in cross-language settings. In this paper, we propose a Multimodal Dual Attention Transformer (MDAT) model…

Computation and Language · Computer Science 2023-07-17 Syed Aun Muhammad Zaidi , Siddique Latif , Junaid Qadir

In the big data era, the computer vision field benefits from large-scale datasets such as LAION-2B, LAION-400M, and ImageNet-21K, Kinetics, on which popular models like the ViT and ConvNeXt series have been pre-trained, acquiring…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Qiankun Li , Feng He , Huabao Chen , Xin Ning , Kun Wang , Zengfu Wang

Transformer architectures have proven to learn useful representations for protein classification and generation tasks. However, these representations present challenges in interpretability. In this work, we demonstrate a set of methods for…

Computation and Language · Computer Science 2021-03-30 Jesse Vig , Ali Madani , Lav R. Varshney , Caiming Xiong , Richard Socher , Nazneen Fatema Rajani

Many computer models such as cellular automata and artificial neural networks have been developed and successfully applied. However, in some cases, these models might be restrictive on the possible solutions or their solutions might be…

Artificial Intelligence · Computer Science 2020-09-02 Patrik Christen , Olivier Del Fabbro

We present a novel framework for chemical learning based on Competitive Dimerization Networks (CDNs) - systems in which multiple molecular species, e.g. proteins or DNA/RNA oligomers, reversibly bind to form dimers. We show that these…

Statistical Mechanics · Physics 2025-06-18 Alexei V. Tkachenko , Bortolo Matteo Mognetti , Sergei Maslov

Current Domain Adaptation (DA) methods based on deep architectures assume that the source samples arise from a single distribution. However, in practice, most datasets can be regarded as mixtures of multiple domains. In these cases…

Computer Vision and Pattern Recognition · Computer Science 2018-05-04 Massimiliano Mancini , Lorenzo Porzi , Samuel Rota Bulò , Barbara Caputo , Elisa Ricci

Accurate and robust drug response prediction is of utmost importance in precision medicine. Although many models have been developed to utilize the representations of drugs and cancer cell lines for predicting cancer drug responses (CDR),…

Quantitative Methods · Quantitative Biology 2023-11-22 Xiaoqiong Xia , Chaoyu Zhu , Yuqi Shan , Fan Zhong , Lei Liu

Time series forecasting is essential for a wide range of real-world applications. Recent studies have shown the superiority of Transformer in dealing with such problems, especially long sequence time series input(LSTI) and long sequence…

Machine Learning · Computer Science 2022-02-15 Li Shen , Yangzhu Wang

Since autonomous driving systems usually face dynamic and ever-changing environments, continual test-time adaptation (CTTA) has been proposed as a strategy for transferring deployed models to continually changing target domains. However,…

Computer Vision and Pattern Recognition · Computer Science 2024-04-01 Jiayi Ni , Senqiao Yang , Ran Xu , Jiaming Liu , Xiaoqi Li , Wenyu Jiao , Zehui Chen , Yi Liu , Shanghang Zhang