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The biological functions of proteins often depend on dynamic structural ensembles. In this work, we develop a flow-based generative modeling approach for learning and sampling the conformational landscapes of proteins. We repurpose highly…

Biomolecules · Quantitative Biology 2024-09-04 Bowen Jing , Bonnie Berger , Tommi Jaakkola

Weight-ensembles are formed when the parameters of multiple neural networks are directly averaged into a single model. They have demonstrated generalization capability in-distribution (ID) and out-of-distribution (OOD) which is not…

Machine Learning · Computer Science 2024-09-05 Alex Rojas , David Alvarez-Melis

We propose an algorithm for incremental learning of classifiers. The proposed method enables an ensemble of classifiers to learn incrementally by accommodating new training data. We use an effective mechanism to overcome the…

Machine Learning · Computer Science 2019-02-11 Shivang Agarwal , C. Ravindranath Chowdary , Shripriya Maheshwari

We present the first learning-augmented data structure for implementing dictionaries with optimal consistency and robustness. Our data structure, named RobustSL, is a skip list augmented by predictions of access frequencies of elements in a…

Data Structures and Algorithms · Computer Science 2024-02-16 Ali Zeynali , Shahin Kamali , Mohammad Hajiesmaili

A new implementation of an adiabatically-trained ensemble model is derived that shows significant improvements over classical methods. In particular, empirical results of this new algorithm show that it offers not just higher performance,…

Machine Learning · Computer Science 2022-10-17 Salvatore Certo , Andrew Vlasic , Daniel Beaulieu

We establish the first mathematically rigorous link between Bayesian, variational Bayesian, and ensemble methods. A key step towards this it to reformulate the non-convex optimisation problem typically encountered in deep learning as a…

Machine Learning · Statistics 2023-10-24 Veit David Wild , Sahra Ghalebikesabi , Dino Sejdinovic , Jeremias Knoblauch

Ensembling a neural network is a widely recognized approach to enhance model performance, estimate uncertainty, and improve robustness in deep supervised learning. However, deep ensembles often come with high computational costs and memory…

While deep ensembles are widely considered to be the default method for uncertainty quantification in deep learning, their effectiveness for graph-structured data is often simply assumed based on successes in domains like computer vision.…

Machine Learning · Computer Science 2026-05-22 Pedro C. Vieira , Pedro Ribeiro , Viacheslav Borovitskiy

Transferring a deep neural network trained on one problem to another requires only a small amount of data and little additional computation time. The same behaviour holds for ensembles of deep learning models typically superior to a single…

Machine Learning · Computer Science 2022-06-28 Ilya Shashkov , Nikita Balabin , Evgeny Burnaev , Alexey Zaytsev

Conventional computer vision models rely on very deep, feedforward networks processing whole images and trained offline with extensive labeled data. In contrast, biological vision relies on comparatively shallow, recurrent networks that…

Neural and Evolutionary Computing · Computer Science 2024-11-27 Osvaldo M Velarde , Lucas C Parra

In this article, we take one step toward understanding the learning behavior of deep residual networks, and supporting the observation that deep residual networks behave like ensembles. We propose a new convolutional neural network…

Computer Vision and Pattern Recognition · Computer Science 2024-10-30 Masoud Abdi , Saeid Nahavandi

Aggregating multiple learners through an ensemble of models aim to make better predictions by capturing the underlying distribution of the data more accurately. Different ensembling methods, such as bagging, boosting, and stacking/blending,…

Machine Learning · Statistics 2020-11-03 Mohsen Shahhosseini , Guiping Hu , Hieu Pham

Ensemble learning is a mainstay in modern data science practice. Conventional ensemble algorithms assign to base models a set of deterministic, constant model weights that (1) do not fully account for individual models' varying accuracy…

Methodology · Statistics 2019-04-02 Jeremiah Zhe Liu , John Paisley , Marianthi-Anna Kioumourtzoglou , Brent A. Coull

Learning to remember over long timescales is fundamentally challenging for recurrent neural networks (RNNs). While much prior work has explored why RNNs struggle to learn long timescales and how to mitigate this, we still lack a clear…

Neurons and Cognition · Quantitative Biology 2025-03-25 Blake Bordelon , Jordan Cotler , Cengiz Pehlevan , Jacob A. Zavatone-Veth

Following the traditional paradigm of convolutional neural networks (CNNs), modern CNNs manage to keep pace with more recent, for example transformer-based, models by not only increasing model depth and width but also the kernel size. This…

Computer Vision and Pattern Recognition · Computer Science 2023-06-23 Paul Gavrikov , Janis Keuper

Generative Flow Networks for continuous scenarios (CFlowNets) have shown promise in solving sequential decision-making tasks by learning stochastic policies using a flow and a retrieval network. Despite their demonstrated efficiency…

Machine Learning · Computer Science 2026-03-19 Zahin Sufiyan , Shadan Golestan , Yoshihiro Mitsuka , Shotaro Miwa , Osmar Zaiane

This work is on constrained large-scale non-convex optimization where the constraint set implies a manifold structure. Solving such problems is important in a multitude of fundamental machine learning tasks. Recent advances on Riemannian…

Machine Learning · Computer Science 2023-02-23 Yian Deng , Tingting Mu

We consider the problem of approximating flow functions of continuous-time dynamical systems with inputs. It is well-known that continuous-time recurrent neural networks are universal approximators of this type of system. In this paper, we…

Systems and Control · Electrical Eng. & Systems 2023-09-20 Miguel Aguiar , Amritam Das , Karl H. Johansson

Training deep neural networks remains computationally intensive due to the itera2 tive nature of gradient-based optimization. We propose Gradient Flow Matching (GFM), a continuous-time modeling framework that treats neural network training…

Machine Learning · Computer Science 2025-05-27 Xiao Shou , Yanna Ding , Jianxi Gao

By incorporating physical consistency as inductive bias, deep neural networks display increased generalization capabilities and data efficiency in learning nonlinear dynamic models. However, the complexity of these models generally…

Machine Learning · Computer Science 2025-03-03 Katharina Friedl , Noémie Jaquier , Jens Lundell , Tamim Asfour , Danica Kragic
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