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Physician burnout in the United States has reached critical levels, driven in part by the administrative burden of Electronic Health Record (EHR) documentation and complex diagnostic codes. To relieve this strain and maintain strict patient…

Information Retrieval · Computer Science 2026-03-25 Peter Hartnett , Chung-Chi Huang , Sarah Hartnett , David Hartnett

Large language models (LLMs) have recently showcased remarkable capabilities, spanning a wide range of tasks and applications, including those in the medical domain. Models like GPT-4 excel in medical question answering but may face…

Computation and Language · Computer Science 2025-07-02 Bowen Wang , Jiuyang Chang , Yiming Qian , Guoxin Chen , Junhao Chen , Zhouqiang Jiang , Jiahao Zhang , Yuta Nakashima , Hajime Nagahara

Clinical texts, such as admission notes, discharge summaries, and progress notes, contain rich and valuable information that can be used for clinical decision making. However, a severe bottleneck in using transformer encoders for processing…

Computation and Language · Computer Science 2025-01-03 Mohammad Junayed Hasan , Suhra Noor , Mohammad Ashrafuzzaman Khan

While there has been recent progress in abstractive summarization as applied to different domains including news articles, scientific articles, and blog posts, the application of these techniques to clinical text summarization has been…

Computation and Language · Computer Science 2022-04-05 Amanuel Alambo , Tanvi Banerjee , Krishnaprasad Thirunarayan , Mia Cajita

Within the intensive care unit (ICU), a wealth of patient data, including clinical measurements and clinical notes, is readily available. This data is a valuable resource for comprehending patient health and informing medical decisions, but…

Machine Learning · Computer Science 2023-12-13 Ryan King , Tianbao Yang , Bobak Mortazavi

Electronic Healthcare records contain large volumes of unstructured data in different forms. Free text constitutes a large portion of such data, yet this source of richly detailed information often remains under-used in practice because of…

Computation and Language · Computer Science 2019-10-17 M. Tarik Altuncu , Erik Mayer , Sophia N. Yaliraki , Mauricio Barahona

Clinical notes contain rich data, which is unexploited in predictive modeling compared to structured data. In this work, we developed a new text representation Clinical XLNet for clinical notes which also leverages the temporal information…

Computation and Language · Computer Science 2019-12-30 Kexin Huang , Abhishek Singh , Sitong Chen , Edward T. Moseley , Chih-ying Deng , Naomi George , Charlotta Lindvall

Large Language Models (LLMs) have fundamentally transformed approaches to Natural Language Processing (NLP) tasks across diverse domains. In healthcare, accurate and cost-efficient text classification is crucial, whether for clinical notes…

Computation and Language · Computer Science 2026-02-16 Hajar Sakai , Sarah S. Lam

Clinical notes are an efficient way to record patient information but are notoriously hard to decipher for non-experts. Automatically simplifying medical text can empower patients with valuable information about their health, while saving…

A crucial component for clinical risk prediction is developing a reliable prediction model is collecting high-quality time series clinical events. In this work, we release such a dataset that consists of 22,588,586 Clinical Time Series…

Artificial Intelligence · Computer Science 2025-11-19 Jing Wang , Xing Niu , Tong Zhang , Jie Shen , Juyong Kim , Jeremy C. Weiss

Longitudinal clinical notes contain rich evidence of how patients evolve over time, but converting this signal into training supervision for clinical prediction remains challenging. We extend Foresight Learning to clinical prediction by…

Machine Learning · Computer Science 2026-05-14 Benjamin Turtel , Paul Wilczewski , Kris Skotheim

With their growing capabilities, generative large language models (LLMs) are being increasingly investigated for complex medical tasks. However, their effectiveness in real-world clinical applications remains underexplored. To address this,…

Computation and Language · Computer Science 2026-01-27 Paul Grundmann , Dennis Fast , Jan Frick , Thomas Steffek , Felix Gers , Wolfgang Nejdl , Alexander Löser

Large language models (LLMs) show promise for clinical reasoning and decision support, but evaluation in realistic, electronic health record-congruent settings remains limited. Existing benchmarks often rely on static datasets or…

Computation and Language · Computer Science 2026-05-29 Valentina Bui Muti , Eugénie Dulout , Ziquan Fu

Background and Objective: Open-source deep learning toolkits are one of the driving forces for developing medical image segmentation models. Existing toolkits mainly focus on fully supervised segmentation and require full and accurate…

Image and Video Processing · Electrical Eng. & Systems 2023-02-14 Guotai Wang , Xiangde Luo , Ran Gu , Shuojue Yang , Yijie Qu , Shuwei Zhai , Qianfei Zhao , Kang Li , Shaoting Zhang

Scribble supervision has emerged as a promising approach for reducing annotation costs in medical 3D segmentation by leveraging sparse annotations instead of voxel-wise labels. While existing methods report strong performance, a closer…

Computer Vision and Pattern Recognition · Computer Science 2025-08-14 Karol Gotkowski , Klaus H. Maier-Hein , Fabian Isensee

Prediction of medical codes from clinical notes is both a practical and essential need for every healthcare delivery organization within current medical systems. Automating annotation will save significant time and excessive effort spent by…

Computation and Language · Computer Science 2021-07-23 Byung-Hak Kim , Varun Ganapathi

Medical order extraction is essential for structuring actionable clinical information, supporting decision-making, and enabling downstream applications such as documentation and workflow automation. Orders may be embedded in diverse…

Computation and Language · Computer Science 2025-10-14 A H M Rezaul Karim , Ozlem Uzuner

Automated analysis of clinical notes is attracting increasing attention. However, there has not been much work on medical term abbreviation disambiguation. Such abbreviations are abundant, and highly ambiguous, in clinical documents. One of…

Computation and Language · Computer Science 2019-11-01 Irene Li , Michihiro Yasunaga , Muhammed Yavuz Nuzumlalı , Cesar Caraballo , Shiwani Mahajan , Harlan Krumholz , Dragomir Radev

Objective: Function is increasingly recognized as an important indicator of whole-person health. This study evaluates the ability of publicly available large language models (LLMs) to accurately identify the presence of functioning…

Computation and Language · Computer Science 2023-12-19 Tuan Dung Le , Thanh Duong , Thanh Thieu

Intensive Care Units are complex, data-rich environments where critically ill patients are treated using variety of clinical equipment. The data collected using this equipment can be used clinical staff to gain insight into the condition of…

Human-Computer Interaction · Computer Science 2024-10-23 Marceli Wac , Raul Santos-Rodriguez , Chris McWilliams , Christopher Bourdeaux