Related papers: In-Place BWT and Lyndon Array Construction in Cons…
The compression of highly repetitive strings (i.e., strings with many repetitions) has been a central research topic in string processing, and quite a few compression methods for these strings have been proposed thus far. Among them, an…
We give efficient algorithms for ranking Lyndon words of length $n$ over an alphabet of size $\sigma$. The rank of a Lyndon word is its position in the sequence of lexicographically ordered Lyndon words of the same length. The outputs are…
We present an improved wavelet tree construction algorithm and discuss its applications to a number of rank/select problems for integer keys and strings. Given a string of length n over an alphabet of size $\sigma\leq n$, our method builds…
We present a new scalable, lightweight algorithm to incrementally construct the BWT and FM-index of large string sets such as those produced by Next Generation Sequencing. The algorithm is designed for massive parallelism and can…
This paper presents a general technique for optimally transforming any dynamic data structure that operates on atomic and indivisible keys by constant-time comparisons, into a data structure that handles unbounded-length keys whose…
We revisit the problem of permuting an array of length $n$ according to a given permutation in place, that is, using only a small number of bits of extra storage. Fich, Munro and Poblete [FOCS 1990, SICOMP 1995] obtained an elegant…
We study the Hamiltonian truncation for the two-dimensional $\lambda\phi^4$ theory within the framework of Hamiltonian truncation effective theory, where truncation artifacts are mitigated through a systematic inclusion of corrective terms…
Orthogonal array, a classical and effective tool for collecting data, has been flourished with its applications in modern computer experiments and engineering statistics. Driven by the wide use of computer experiments with both qualitative…
We investigate properties of the bijective Burrows-Wheeler transform (BBWT). We show that for any string $w$, a bidirectional macro scheme of size $O(r_B)$ can be induced from the BBWT of $w$, where $r_B$ is the number of maximal character…
Most of the successful and predominant methods for bilingual lexicon induction (BLI) are mapping-based, where a linear mapping function is learned with the assumption that the word embedding spaces of different languages exhibit similar…
We introduce a new class of straight-line programs (SLPs), named the Lyndon SLP, inspired by the Lyndon trees (Barcelo, 1990). Based on this SLP, we propose a self-index data structure of $O(g)$ words of space that can be built from a…
The set of permutations on a finite set can be given a lattice structure (known as the weak Bruhat order). The lattice structure is generalized to the set of words on a fixed alphabet $\Sigma = \{ x, y, z, ... \}$, where each letter has a…
We attempt to determine the best order and search algorithm to store $n$ comparable data items in an array, $A$, of length $n$ so that we can, for any query value, $x$, quickly find the smallest value in $A$ that is greater than or equal to…
In this paper, we present several improvements in the parallelization of the in-place merge algorithm, which merges two contiguous sorted arrays into one with an O(T) space complexity (where T is the number of threads). The approach divides…
A Lyndon word is a primitive string which is lexicographically smallest among cyclic permutations of its characters. Lyndon words are used for constructing bases in free Lie algebras, constructing de Bruijn sequences, finding the…
The move structure represents permutations with long contiguously permuted intervals in compressed space with optimal query time. They have become an important feature of compressed text indexes using space proportional to the number of…
A word $w$ over an alphabet $\Sigma$ is a Lyndon word if there exists an order defined on $\Sigma$ for which $w$ is lexicographically smaller than all of its conjugates (other than itself). We introduce and study \emph{universal Lyndon…
A method of constructing a class of bihamiltonian structures is presented. Elements of this class are generalizations of the so-called bihamiltonian structures of general position on odd-dimensional manifolds. The method consists in a…
We study the fundamental question of how efficiently suffix array entries can be accessed when the array cannot be stored explicitly. The suffix array $SA_T[1..n]$ of a text $T$ of length $n$ encodes the lexicographic order of its suffixes…
We consider Broyden's method and some accelerated schemes for nonlinear equations having a strongly regular singularity of first order with a one-dimensional nullspace. Our two main results are as follows. First, we show that the use of a…