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Adsorption energy is a reactivity descriptor that must be accurately predicted for effective machine learning (ML) application in catalyst screening. This process involves determining the lowest energy across various adsorption…

Computational Engineering, Finance, and Science · Computer Science 2024-10-15 Janghoon Ock , Srivathsan Badrinarayanan , Rishikesh Magar , Akshay Antony , Amir Barati Farimani

Efficient catalyst screening necessitates predictive models for adsorption energy, a key property of reactivity. However, prevailing methods, notably graph neural networks (GNNs), demand precise atomic coordinates for constructing graph…

Computational Engineering, Finance, and Science · Computer Science 2023-09-04 Janghoon Ock , Chakradhar Guntuboina , Amir Barati Farimani

Property prediction and inverse structural design of catalytic materials are typically modeled as two independent tasks: the former predicts target properties from given structures, whereas the latter generates candidate structures…

Artificial Intelligence · Computer Science 2026-05-22 Yanjie Li , Jian Xu , Xu-Yao Zhang , Shiming Xiang , Nian Ran , Weijun Li , Cheng-Lin Liu

A central challenge in computational catalysis is the identification of low-energy and chemically plausible adsorption configurations, as these directly affect adsorption energies, reaction pathways, and catalytic performance. Existing…

Materials Science · Physics 2026-05-07 Yifan Li , Arravind Subramanian , Xiaoqing Liu , Qiujie Lyu , Sergey Kozlov , Lei Shen

Graph neural networks (GNNs) have drawn more and more attention from material scientists and demonstrated a high capacity to establish connections between the structure and properties. However, with only unrelaxed structures provided as…

Materials Science · Physics 2022-09-16 Chen Liang , Bowen Wang , Shaogang Hao , Guangyong Chen , Pheng-Ann Heng , Xiaolong Zou

The use of machine learning for material property prediction and discovery has traditionally centered on graph neural networks that incorporate the geometric configuration of all atoms. However, in practice not all this information may be…

There is a perceived dichotomy between structure-based and descriptor-based molecular representations used for predictive chemistry tasks. Here, we study the performance, generalizability, and interpretability of the recently proposed…

Chemical Physics · Physics 2022-03-14 Thijs Stuyver , Connor W. Coley

Attaining the equilibrium state of a catalyst-adsorbate system is key to fundamentally assessing its effective properties, such as adsorption energy. Machine learning methods with finer supervision strategies have been applied to boost and…

Machine Learning · Computer Science 2023-03-07 Bowen Wang , Chen Liang , Jiaze Wang , Furui Liu , Shaogang Hao , Dong Li , Jianye Hao , Guangyong Chen , Xiaolong Zou , Pheng-Ann Heng

New technology for energy storage is necessary for the large-scale adoption of renewable energy sources like wind and solar. The ability to discover suitable catalysts is crucial for making energy storage more cost-effective and scalable.…

Chemical Physics · Physics 2024-04-17 Patrick Geitner

Gene regulatory relationships can be abstracted as a gene regulatory network (GRN), which plays a key role in characterizing complex cellular processes and pathways. Recently, graph neural networks (GNNs), as a class of deep learning…

Molecular Networks · Quantitative Biology 2023-11-07 Hui Zhang , Xuexin An , Qiang He , Yudong Yao , Yudong Zhang , Feng-Lei Fan , Yueyang Teng

In high-energy physics, particle jet tagging plays a pivotal role in distinguishing quark from gluon jets using data from collider experiments. While graph-based deep learning methods have advanced this task beyond traditional…

Machine Learning · Computer Science 2026-01-27 Md Abrar Jahin , Md. Akmol Masud , M. F. Mridha , Nilanjan Dey , Zeyar Aung

Question Answering (QA) is a task that entails reasoning over natural language contexts, and many relevant works augment language models (LMs) with graph neural networks (GNNs) to encode the Knowledge Graph (KG) information. However, most…

Computation and Language · Computer Science 2023-04-26 Jinyoung Park , Hyeong Kyu Choi , Juyeon Ko , Hyeonjin Park , Ji-Hoon Kim , Jisu Jeong , Kyungmin Kim , Hyunwoo J. Kim

Pretraining molecular representation models without labels is fundamental to various applications. Conventional methods mainly process 2D molecular graphs and focus solely on 2D tasks, making their pretrained models incapable of…

Quantitative Methods · Quantitative Biology 2022-11-30 Rui Jiao , Jiaqi Han , Wenbing Huang , Yu Rong , Yang Liu

Graph Neural Networks have been widely applied in critical decision-making areas that demand interpretable predictions, leading to the flourishing development of interpretability algorithms. However, current graph interpretability…

Machine Learning · Computer Science 2024-09-04 Xiaodi Li , Jianfeng Gui , Qian Gao , Haoyuan Shi , Zhenyu Yue

We propose a quantum implicit neural representation (QINR)-based autoencoder (AE) and variational autoencoder (VAE) for image reconstruction and generation tasks. Our purpose is to demonstrate that the QINR in VAEs and AEs can transform…

Machine Learning · Computer Science 2026-03-17 Saadet Müzehher Eren

In this work, we introduce EQ-Net: the first holistic framework that solves both the tasks of log-likelihood ratio (LLR) estimation and quantization using a data-driven method. We motivate our approach with theoretical insights on two…

Machine Learning · Computer Science 2021-05-04 Marius Arvinte , Ahmed H. Tewfik , Sriram Vishwanath

Energy-based models provide a natural bridge between statistical physics and machine learning by representing data through structured energy landscapes. Boltzmann machines are a particularly compelling class of such models for capturing…

Quantum Physics · Physics 2026-05-19 Gilhan Kim , Daniel K. Park

Deep Learning Architectures employ heavy computations and bulk of the computational energy is taken up by the convolution operations in the Convolutional Neural Networks. The objective of our proposed work is to reduce the energy…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-17 Salman Abdul Khaliq , Rehan Hafiz

In this work, we introduce the Quantum Adaptive Excitation Network (QAE-Net), a hybrid quantum-classical framework designed to enhance channel attention mechanisms in Convolutional Neural Networks (CNNs). QAE-Net replaces the classical…

Quantum Physics · Physics 2025-07-16 Yu-Chao Hsu , Kuan-Cheng Chen , Tai-Yue Li , Nan-Yow Chen

Quantum machine learning is a promising direction for building more efficient and expressive models, particularly in domains where understanding complex, structured data is critical. We present the Quantum Graph Transformer (QGT), a hybrid…

Computation and Language · Computer Science 2025-06-10 Shamminuj Aktar , Andreas Bärtschi , Abdel-Hameed A. Badawy , Stephan Eidenbenz
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