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We introduce a new combinatorial method to encode knots and links with applications to knot invariants. Clasp diagrams defined in this paper are combinatorial blueprints for building knot diagrams out of full twists on two strings rather…

Geometric Topology · Mathematics 2019-11-11 Jacob Mostovoy , Michael Polyak

A tuple (s1,t1,s2,t2) of vertices in a simple undirected graph is 2-linked when there are two vertex-disjoint paths respectively from s1 to t1 and s2 to t2. A graph is 2-linked when all such tuples are 2-linked. We give a new and simple…

Data Structures and Algorithms · Computer Science 2025-08-15 Samuel Humeau , Damien Pous

By using the cohomology theory of quandles, quandle cocycle invariants and shadow quandle cocycle invariants are defined for oriented links and surface-links via broken surface diagrams. By using symmetric quandles, symmetric quandle…

Geometric Topology · Mathematics 2015-02-06 Seiichi Kamada , Jieon Kim , Sang Youl Lee

We show how the theory of tangles is equivalent to that of well-connected tangles. These are drawn on a surface with boundary, and equivalent via Reidemeister moves of a restricted kind. This reworking of the graphical foundations for link…

Geometric Topology · Mathematics 2013-02-19 Peter M. Johnson , Sóstenes Lins

We consider embeddings of 3-regular graphs into 3-dimensional Cartesian coordinates, in such a way that two vertices are adjacent if and only if two of their three coordinates are equal (that is, if they lie on an axis-parallel line) and…

Computational Geometry · Computer Science 2015-07-16 David Eppstein

We provide an explicit upper bound on the number of Reidemeister moves required to pass between two diagrams of the same link. This leads to a conceptually simple solution to the equivalence problem for links.

Geometric Topology · Mathematics 2011-06-21 Alexander Coward , Marc Lackenby

Graph Neural Networks (GNNs) have demonstrated remarkable performance in a wide range of tasks, such as node classification, link prediction, and graph classification, by exploiting the structural information in graph-structured data.…

Machine Learning · Computer Science 2026-01-09 Oscar Llorente , Jaime Boal , Eugenio F. Sánchez-Úbeda , Antonio Diaz-Cano , Miguel Familiar

We give a parallel $O(\log(n))$-time algorithm on a CRCW PRAM to assign vertical and horizontal segments to the vertices of any planar bipartite graph $G$ in the following manner: i) Two segments cannot share an interior point ii) Two…

Computational Geometry · Computer Science 2024-09-25 Naman Jain

We develop a formalism to address statistical pattern recognition of graph valued data. Of particular interest is the case of all graphs having the same number of uniquely labeled vertices. When the vertex labels are latent, such graphs are…

Quantitative Methods · Quantitative Biology 2012-10-17 Joshua T. Vogelstein , Carey E. Priebe

Recently N.A'Campo suggested a construction of a link from a generic immersion of a curve into a 2-disk. It is tightly related to the singularity theory. In this paper, we give a simple procedure to draw a diagram of the link from a picture…

Geometric Topology · Mathematics 2009-09-29 Sergei Chmutov

Knot and link diagrams are projections of one or more 3-dimensional simple closed curves into $R^2$, such that no more than two points project to the same point in $R^2$. These diagrams are drawings of 4-regular plane multigraphs. Knots are…

Computational Geometry · Computer Science 2019-03-12 Philipp Kindermann , Stephen Kobourov , Maarten Löffler , Martin Nöllenburg , André Schulz , Birgit Vogtenhuber

Parallel transport of a connection in a smooth fibre bundle yields a functor from the path groupoid of the base manifold into a category that describes the fibres of the bundle. We characterize functors obtained like this by two notions we…

Differential Geometry · Mathematics 2014-08-26 Urs Schreiber , Konrad Waldorf

The hyperlink prediction task, that of proposing new links between webpages, can be used to improve search engines, expand the visibility of web pages, and increase the connectivity and navigability of the web. Hyperlink prediction is…

Data Structures and Algorithms · Computer Science 2016-11-29 Dario Garcia-Gasulla , Eduard Ayguadé , Jesús Labarta , Ulises Cortés , Toyotaro Suzumura

Wiring diagrams, as seen in digital circuits, can be nested hierarchically and thus have an aspect of self-similarity. We show that wiring diagrams form the morphisms of an operad $\mcT$, capturing this self-similarity. We discuss the…

Databases · Computer Science 2013-05-03 David I. Spivak

Bandelt and Mulder's structural characterization of Bipartite Distance Hereditary graphs asserts that such graphs can be built inductively starting from a single vertex and by repeatedly adding either pending vertices or twins (i.e.,…

Discrete Mathematics · Computer Science 2015-11-11 Nicola Apollonio , Massimiliano Caramia , Paolo Giulio Franciosa , Jean-François Mascari

Cosine-similarity is the cosine of the angle between two vectors, or equivalently the dot product between their normalizations. A popular application is to quantify semantic similarity between high-dimensional objects by applying…

Information Retrieval · Computer Science 2024-03-11 Harald Steck , Chaitanya Ekanadham , Nathan Kallus

We prove that two links related by a surgery along a connected, strict graph clasper of degree n are C_n-equivalent, i.e, related by a sequence of surgeries along strict tree claspers of degree n.

Geometric Topology · Mathematics 2007-05-23 Kazuo Habiro

Deep Neural Networks (DNNs) are becoming an important tool in modern computing applications. Accelerating their training is a major challenge and techniques range from distributed algorithms to low-level circuit design. In this survey, we…

Machine Learning · Computer Science 2018-09-18 Tal Ben-Nun , Torsten Hoefler

We develop the first parallel graph coloring heuristics with strong theoretical guarantees on work and depth and coloring quality. The key idea is to design a relaxation of the vertex degeneracy order, a well-known graph theory concept, and…

Data Structures and Algorithms · Computer Science 2020-11-12 Maciej Besta , Armon Carigiet , Zur Vonarburg-Shmaria , Kacper Janda , Lukas Gianinazzi , Torsten Hoefler

The notion of a braided chord diagram is introduced and studied. An equivalence relation is given which identifies all braidings of a fixed chord diagram. It is shown that finite-type invariants are stratified by braid index for knots which…

Geometric Topology · Mathematics 2007-05-23 Joan S. Birman , Rolland Trapp