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Large-scale Language Models (LLMs) have revolutionized human-AI interaction and achieved significant success in the generation of novel ideas. However, current assessments of idea generation overlook crucial factors such as knowledge…

Artificial Intelligence · Computer Science 2025-05-27 Yansheng Qiu , Haoquan Zhang , Zhaopan Xu , Ming Li , Diping Song , Zheng Wang , Kaipeng Zhang

Despite growing reference libraries and advanced computational tools, progress in the field of metabolomics remains constrained by low rates of annotating measured spectra. The recent developments of large language models (LLMs) have led to…

Quantitative Methods · Quantitative Biology 2025-11-14 Margaret R. Martin , Soha Hassoun

Large language models are often assumed to acquire increasingly structured, generalizable internal representations simply by scaling data and parameters. We interrogate this assumption by introducing a Clinical Trial Natural Language…

Artificial Intelligence · Computer Science 2025-08-15 Maël Jullien , Marco Valentino , André Freitas

Recent advances in large language models (LLMs) have enabled a new class of AI agents that automate multiple stages of the data science workflow by integrating planning, tool use, and multimodal reasoning across text, code, tables, and…

We introduce BriLLM, a brain-inspired large language model that fundamentally redefines the foundations of machine learning through its implementation of Signal Fully-connected flowing (SiFu) learning. This work addresses the critical…

Computation and Language · Computer Science 2025-09-09 Hai Zhao , Hongqiu Wu , Dongjie Yang , Anni Zou , Jiale Hong

Scientific workflow systems are increasingly popular for expressing and executing complex data analysis pipelines over large datasets, as they offer reproducibility, dependability, and scalability of analyses by automatic parallelization on…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-09 Mario Sänger , Ninon De Mecquenem , Katarzyna Ewa Lewińska , Vasilis Bountris , Fabian Lehmann , Ulf Leser , Thomas Kosch

The pace of scientific research, vital for improving human life, is complex, slow, and needs specialized expertise. Meanwhile, novel, impactful research often stems from both a deep understanding of prior work, and a cross-pollination of…

Computation and Language · Computer Science 2025-02-11 Jinheon Baek , Sujay Kumar Jauhar , Silviu Cucerzan , Sung Ju Hwang

The scientific research paradigm is undergoing a profound transformation owing to the development of Artificial Intelligence (AI). Recent works demonstrate that various AI-assisted research methods can largely improve research efficiency by…

Artificial Intelligence · Computer Science 2025-04-10 Jiakang Yuan , Xiangchao Yan , Shiyang Feng , Bo Zhang , Tao Chen , Botian Shi , Wanli Ouyang , Yu Qiao , Lei Bai , Bowen Zhou

Deep Research (DR) is an emerging agent application that leverages large language models (LLMs) to address open-ended queries. It requires the integration of several capabilities, including multi-step reasoning, cross-document synthesis,…

Navigating the vast and rapidly growing body of scientific literature is a formidable challenge for aspiring researchers. Current approaches to supporting research idea generation often rely on generic large language models (LLMs). While…

Artificial Intelligence · Computer Science 2025-06-17 Franklin Lee , Tengfei Ma

The rapid advancement of large language models (LLMs) is fundamentally reshaping software engineering (SE), driving a paradigm shift in both academic research and industrial practice. While top-tier SE venues continue to show sustained or…

Software Engineering · Computer Science 2025-12-18 Hang Yu , Yuzhou Lai , Li Zhang , Xiaoli Lian , Fang Liu , Yanrui Dong , Ting Zhang , Zhi Jin , David Lo

Autonomous agents powered by large language models (LLMs) promise to accelerate scientific discovery end-to-end, but rigorously evaluating their capacity for verifiable discovery remains a central challenge. Existing benchmarks face a…

Artificial Intelligence · Computer Science 2026-02-04 Zhen Wang , Fan Bai , Zhongyan Luo , Jinyan Su , Kaiser Sun , Xinle Yu , Jieyuan Liu , Kun Zhou , Claire Cardie , Mark Dredze , Eric P. Xing , Zhiting Hu

The rapid evolution of artificial intelligence has led to expectations of transformative impact on science, yet current systems remain fundamentally limited in enabling genuine scientific discovery. This perspective contends that progress…

Artificial Intelligence · Computer Science 2025-12-16 Karthik Duraisamy

Fermi Problems (FPs) are mathematical reasoning tasks that require human-like logic and numerical reasoning. Unlike other reasoning questions, FPs often involve real-world impracticalities or ambiguous concepts, making them challenging even…

Computation and Language · Computer Science 2025-04-04 Zishuo Liu , Carlos Rabat Villarreal , Mostafa Rahgouy , Amit Das , Zheng Zhang , Chang Ren , Dongji Feng

Recent availability of Large Language Models (LLMs) has led to the development of numerous LLM-based approaches aimed at providing natural language interfaces for various end-user tasks. These end-user tasks in turn can typically be…

Artificial Intelligence · Computer Science 2025-02-14 Sudhir Agarwal , Anu Sreepathy , David H. Alonso , Prarit Lamba

Intent, typically clearly formulated and planned, functions as a cognitive framework for communication and problem-solving. This paper introduces the concept of Speaking with Intent (SWI) in large language models (LLMs), where the…

Computation and Language · Computer Science 2025-09-12 Yuwei Yin , EunJeong Hwang , Giuseppe Carenini

Large language models (LLMs) show their powerful automatic reasoning and planning capability with a wealth of semantic knowledge about the human world. However, the grounding problem still hinders the applications of LLMs in the real-world…

Computation and Language · Computer Science 2023-09-06 Shaohui Peng , Xing Hu , Qi Yi , Rui Zhang , Jiaming Guo , Di Huang , Zikang Tian , Ruizhi Chen , Zidong Du , Qi Guo , Yunji Chen , Ling Li

Large Language Models (LLMs) have transformed how people interact with artificial intelligence (AI) systems, achieving state-of-the-art results in various tasks, including scientific discovery and hypothesis generation. However, the lack of…

Computation and Language · Computer Science 2024-11-06 Sikun Guo , Amir Hassan Shariatmadari , Guangzhi Xiong , Albert Huang , Eric Xie , Stefan Bekiranov , Aidong Zhang

Large Language Models (LLMs) often falter at complex planning tasks that require exploration and self-correction, as their linear reasoning process struggles to recover from early mistakes. While search algorithms like Monte Carlo Tree…

Artificial Intelligence · Computer Science 2025-12-30 Yifan Zhang , Giridhar Ganapavarapu , Srideepika Jayaraman , Bhavna Agrawal , Dhaval Patel , Achille Fokoue

Survey papers play a critical role in scientific communication by consolidating progress across a field. Recent advances in Large Language Models (LLMs) offer a promising solution by automating key steps in the survey-generation pipeline,…

Computation and Language · Computer Science 2025-08-21 Jing Chen , Zhiheng Yang , Yixian Shen , Jie Liu , Adam Belloum , Chrysa Papagainni , Paola Grosso
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