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The evolutionary relationships among organisms have traditionally been represented using rooted phylogenetic trees. However, due to reticulate processes such as hybridization or lateral gene transfer, evolution cannot always be adequately…

Populations and Evolution · Quantitative Biology 2022-01-20 Sungsik Kong , Joan Carles Pons , Laura Kubatko , Kristina Wicke

We show that a proof in multiplicative linear logic can be represented as a decorated surface, such that two proofs are logically equivalent just when their surfaces are geometrically equivalent. This is an extended abstract for…

Logic in Computer Science · Computer Science 2017-01-19 Lawrence Dunn , Jamie Vicary

Stacking, a potent ensemble learning method, leverages a meta-model to harness the strengths of multiple base models, thereby enhancing prediction accuracy. Traditional stacking techniques typically utilize established learning models, such…

Machine Learning · Computer Science 2024-10-31 Wei Wu , Liang Tang , Zhongjie Zhao , Chung-Piaw Teo

Fact-checking real-world claims often requires collecting multiple pieces of evidence and applying complex multi-step reasoning. In this paper, we present Program-Guided Fact-Checking (ProgramFC), a novel fact-checking model that decomposes…

Computation and Language · Computer Science 2023-05-23 Liangming Pan , Xiaobao Wu , Xinyuan Lu , Anh Tuan Luu , William Yang Wang , Min-Yen Kan , Preslav Nakov

This letter introduces a new, substantially simplified version of the branching recurrence operation of computability logic (see http://www.cis.upenn.edu/~giorgi/cl.html), and proves its equivalence to the old, "canonical" version.

Logic in Computer Science · Computer Science 2012-08-03 Giorgi Japaridze

Large language models have achieved remarkable success on final-answer mathematical problems, largely due to the ease of applying reinforcement learning with verifiable rewards. However, the reasoning underlying these solutions is often…

Quantum advantage is notoriously hard to find and even harder to prove. For example the class of functions computable with classical physics actually exactly coincides with the class computable quantum-mechanically. It is strongly believed,…

Quantum Physics · Physics 2015-10-07 Howard Dale , David Jennings , Terry Rudolph

We investigate how large language models can be used as research tools in scientific computing while preserving mathematical rigor. We propose a human-in-the-loop workflow for interactive theorem proving and discovery with LLMs. Human…

Human-Computer Interaction · Computer Science 2025-12-12 Chenyi Li , Zhijian Lai , Dong An , Jiang Hu , Zaiwen Wen

By any account, the 1998 proof of the Kepler conjecture is complex. The thesis underlying this article is that the proof is complex because it is highly under-automated. Throughout that proof, manual procedures are used where automated ones…

Metric Geometry · Mathematics 2007-05-23 Thomas C. Hales

The demonstrated code-understanding capability of LLMs raises the question of whether they can be used for automated program verification, a task that demands high-level abstract reasoning about program properties that is challenging for…

Formal Languages and Automata Theory · Computer Science 2024-04-26 Haoze Wu , Clark Barrett , Nina Narodytska

The quest for quantum computers is motivated by their potential for solving problems that defy existing, classical, computers. The theory of computational complexity, one of the crown jewels of computer science, provides a rigorous…

Statistical Mechanics · Physics 2010-09-10 C. R. Laumann , R. Moessner , A. Scardicchio , S. L. Sondhi

Just as conventional functional programs may be understood as proofs in an intuitionistic logic, so quantum processes can also be viewed as proofs in a suitable logic. We describe such a logic, the logic of compact closed categories and…

Category Theory · Mathematics 2009-03-31 Ross Duncan

Ancestral sequence reconstruction is a key task in computational biology. It consists in inferring a molecular sequence at an ancestral species of a known phylogeny, given descendant sequences at the tip of the tree. In addition to its many…

Populations and Evolution · Quantitative Biology 2022-07-27 Brandon Legried , Sebastien Roch

In this work, we explore proof theoretical connections between sequent, nested and labelled calculi. In particular, we show a general algorithm for transforming a class of nested systems into sequent calculus systems, passing through linear…

Logic in Computer Science · Computer Science 2018-02-15 Elaine Pimentel

This paper is a reflexion on the computability of natural language semantics. It does not contain a new model or new results in the formal semantics of natural language: it is rather a computational analysis of the logical models and…

Computation and Language · Computer Science 2016-05-16 Richard Moot , Christian Retoré

We explore the consequences of layering a Lambek proof system over an arbitrary (constraint) logic. A simple model-theoretic semantics for our hybrid language is provided for which a particularly simple combination of Lambek's and the proof…

cmp-lg · Computer Science 2008-02-03 Jochen Doerre , Suresh Manandhar

Motivated by the results of recent laboratory experiments (Yoshida et al. Nature, 424, 303-306 (2003)) as well as many earlier field observations that evolutionary changes can take place in ecosystems over relatively short ecological time…

Populations and Evolution · Quantitative Biology 2007-05-23 Debashish Chowdhury , Dietrich Stauffer

Mathematical theorem proving is an important testbed for large language models' deep and abstract reasoning capability. This paper focuses on improving LLMs' ability to write proofs in formal languages that permit automated proof…

Machine Learning · Computer Science 2024-11-05 Kefan Dong , Arvind Mahankali , Tengyu Ma

In this article we furnish a new simple proof of a hard identity from the theory of cubature formulas via the method of coefficients.

Combinatorics · Mathematics 2012-02-15 Georgy P. Egorychev

We present an approach to support partiality in type-level computation without compromising expressiveness or type safety. Existing frameworks for type-level computation either require totality or implicitly assume it. For example, type…

Programming Languages · Computer Science 2017-06-30 J. Garrett Morris , Richard Eisenberg
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