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When comparing time-varying treatments in a non-randomised setting, one must often correct for time-dependent confounders that influence treatment choice over time and that are themselves influenced by treatment. We present a new two step…

Methodology · Statistics 2016-10-06 J. M. Gran , R. Hoff , K. Røysland , B. Ledergerber , J. Young , O. O. Aalen

Intra-tumour heterogeneity (ITH) has a strong impact on the efficacy of the immune response against solid tumours. The number of sub-populations of cancer cells expressing different antigens and the percentage of immunogenic cells (i.e.…

Cell Behavior · Quantitative Biology 2021-12-08 Emma Leschiera , Tommaso Lorenzi , Shensi Shen , Luis Almeida , Chloe Audebert

We consider a class of monotone systems in which the control signal multiplies the state. Among other applications, such bilinear systems can be used to model the evolutionary dynamics of HIV in the presence of combination drug therapy. For…

Optimization and Control · Mathematics 2016-12-01 Neil K. Dhingra , Marcello Colombino , Mihailo R. Jovanović , Anders Rantzer , Roy S. Smith

Healthcare-associated infections (HAIs) remain a public health problem. Previous work showed intensive care unit (ICU) population structure impacts methicillin-resistant Staphylococcus aureus (MRSA) rates. Unexplored in that work was the…

Populations and Evolution · Quantitative Biology 2019-09-27 Christopher T. Short , Matthew S. Mietchen , Eric T. Lofgren

This paper considers the problem of modeling epidemic outbreaks in different regions with a common model, that uses additional information about these regions to adjust its parameters and relieve us of mundanity of data collecting, and…

Physics and Society · Physics 2024-12-06 Andrei Neverov , Olga Krivorotko

Methods are lacking to handle the problem of survival analysis in the presence of an interval-censored covariate, specifically the case in which the conditional hazard of the primary event of interest depends on the occurrence of a…

This paper considers a mathematical model based on the transmission dynamics of hepatitis C virus (HCV) infection. In addition to the usual compartments for susceptible, exposed, and infected individuals, this model includes compartments…

Populations and Evolution · Quantitative Biology 2017-12-25 Daniah Tahir , Abid Ali Lashari , Kazeem Oare Okosun

We empirically demonstrate that graphical models can be a valuable tool in the identification of mediating variables in causal pathways. We make use of graphical models to elucidate the causal pathway through which the treatment influences…

Applications · Statistics 2019-07-11 Adrian Dobra , Katherine Buhikire , Joachim G. Voss

The expansion of tools against HIV transmission has brought increased interest in epidemiological models that can predict the impact of these interventions. The EMOD-HIV model was recently compared to eleven other independently developed…

Quantitative Methods · Quantitative Biology 2012-06-19 Anna Bershteyn , Daniel J. Klein , Edward Wenger , Philip A. Eckhoff

Equipment sharing among people who inject drugs (PWID) is a key risk factor in infection by hepatitis C virus (HCV). Both the effectiveness and cost-effectiveness of interventions aimed at reducing HCV transmission in this population (such…

In this paper, we examine a well-established model for HIV wild-type infection. The algorithm for steepest descent method for fixed final-time is stated and a modified method for free final-time is presented. The first type of cost…

Optimization and Control · Mathematics 2011-10-18 Gaurav Pachpute , Kriti Saxena

In the human immune system, T-helper cells are able to differentiate into two lymphocyte subsets: Th1 and Th2. The intracellular signaling pathways of differentiation form a dynamic regulation network by secreting distinctive types of…

Cell Behavior · Quantitative Biology 2013-04-24 Qixin Wang , Menghui Li , Li Charlie Xia , Ge Wen , Hualong Zu , Mingyi Gao

In most countries CD4+ cell counts are still used for deciding when to start HIV-positive people on anti-retroviral therapy. However, various CD4+ thresholds, 200, 350 or 500/\muL, are chosen arbitrarily and for historical reasons. Here we…

Quantitative Methods · Quantitative Biology 2012-10-17 Brian G. Williams , Renier van Rooyen , Martin Nieuwoudt

Modeling spreading processes in complex random networks plays an essential role in understanding and prediction of many real phenomena like epidemics or rumor spreading. The dynamics of such systems may be represented algorithmically by…

Social and Information Networks · Computer Science 2012-11-20 S. V. Ivanov , A. V. Boukhanovsky , P. M. A. Sloot

This study was sparked by an extensive longitudinal dataset focusing on HIV CD4 T$^+$ cell counts from Livingstone district, Zambia. Analysis of the corresponding histogram plots reveals an absence of symmetry in the marginal distributions,…

Methodology · Statistics 2025-05-28 Subhajit Chattopadhyay

We present a mathematical model for within host viral infections that incorporates the Crowley Martin functional response, focusing on the dynamics influenced by periodic effects. This study establishes key properties of the model,…

Dynamical Systems · Mathematics 2025-03-14 Ibrahim Nali , Attila Dénes

Epidemiologic studies of infectious diseases often rely on models of contact networks to capture the complex interactions that govern disease spread, and ongoing projects aim to vastly increase the scale at which such data can be collected.…

Cryptography and Security · Computer Science 2026-04-10 Shlomi Hod , Debanuj Nayak , Jason R. Gantenberg , Iden Kalemaj , Thomas A. Trikalinos , Adam Smith

Master equations provide researchers with the ability to track the distribution over possible states of a system. From these equations, we can summarize the temporal dynamics through a method of moments. These distributions and their…

Populations and Evolution · Quantitative Biology 2024-08-13 Mariah C. Boudreau , Jamie A. Cohen , Laurent Hébert-Dufresne

In this paper we present a delay induced model for hepatitis C virus incorporating the healthy and infected hepatocytes as well as infectious and noninfectious virions. The model is mathematically analyzed and characterized, both for the…

Dynamical Systems · Mathematics 2014-03-11 Sandip Banerjee , Ram Keval , Sunita Gakkhar

We consider a time-delayed HIV/AIDS epidemic model with education dissemination and study the asymptotic dynamics of solutions as well as the asymptotic behavior of the endemic equilibrium with respect to the amount of information…

Dynamical Systems · Mathematics 2021-08-10 Dawit Denu , Sedar Ngoma , Rachidi B. Salako