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HipMCL is a high-performance distributed memory implementation of the popular Markov Cluster Algorithm (MCL) and can cluster large-scale networks within hours using a few thousand CPU-equipped nodes. It relies on sparse matrix computations…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-26 Oguz Selvitopi , Md Taufique Hussain , Ariful Azad , Aydın Buluç

Sparse Matrix-Vector Multiplication (SpMV) is a critical operation for the iterative solver of Finite Element Methods on computer simulation. Since the SpMV operation is a memory-bound algorithm, the efficiency of data movements heavily…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-04-15 Chong Chen

Graph Neural Networks (GNNs) have shown great superiority on non-Euclidean graph data, achieving ground-breaking performance on various graph-related tasks. As a practical solution to train GNN on large graphs with billions of nodes and…

Machine Learning · Computer Science 2024-09-24 Zeyu Zhu , Peisong Wang , Qinghao Hu , Gang Li , Xiaoyao Liang , Jian Cheng

Graph Neural Networks (GNNs) are a computationally efficient method to learn embeddings and classifications on graph data. However, GNN training has low computational intensity, making communication costs the bottleneck for scalability.…

Machine Learning · Computer Science 2025-04-08 Ujjaini Mukhodopadhyay , Alok Tripathy , Oguz Selvitopi , Katherine Yelick , Aydin Buluc

This paper presents GRAPHR, the first ReRAM-based graph processing accelerator. GRAPHR follows the principle of near-data processing and explores the opportunity of performing massive parallel analog operations with low hardware and energy…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-12-12 Linghao Song , Youwei Zhuo , Xuehai Qian , Hai Li , Yiran Chen

General Matrix Multiplication (GEMM) is a crucial algorithm for various applications such as machine learning and scientific computing, and an efficient GEMM implementation is essential for the performance of these systems. While…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-03 Shixun Wu , Yujia Zhai , Jinyang Liu , Jiajun Huang , Zizhe Jian , Bryan M. Wong , Zizhong Chen

We present an interface and an implementation of the General Matrix Multiply (GEMM) routine for multiple small matrices processed simultaneously on NVIDIA graphics processing units (GPUs). We focus on matrix sizes under 16. The…

Mathematical Software · Computer Science 2013-04-29 Chetan Jhurani , Paul Mullowney

Sparse matrix-vector and matrix-matrix multiplication (SpMV and SpMM) are fundamental in both conventional (graph analytics, scientific computing) and emerging (sparse DNN, GNN) domains. Workload-balancing and parallel-reduction are…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-15 Guyue Huang , Guohao Dai , Yu Wang , Yufei Ding , Yuan Xie

Sparse matrix vector multiplication (SpMV) is central to numerous data-intensive applications, but requires streaming indirect memory accesses that severely degrade both processing and memory throughput in state-of-the-art architectures.…

Hardware Architecture · Computer Science 2023-11-20 Chi Zhang , Paul Scheffler , Thomas Benz , Matteo Perotti , Luca Benini

The inference and training stages of Graph Neural Networks (GNNs) are often dominated by the time required to compute a long sequence of matrix multiplications between the sparse graph adjacency matrix and its embedding. To accelerate these…

Data Structures and Algorithms · Computer Science 2024-09-05 João N. F. Alves , Samir Moustafa , Siegfried Benkner , Alexandre P. Francisco , Wilfried N. Gansterer , Luís M. S. Russo

Knowledge graph (KG) learning offers a powerful framework for generating new knowledge and making inferences. Training KG embedding can take a significantly long time, especially for larger datasets. Our analysis shows that the gradient…

Machine Learning · Computer Science 2025-05-01 Md Saidul Hoque Anik , Ariful Azad

Several manufacturers have already started to commercialize near-bank Processing-In-Memory (PIM) architectures. Near-bank PIM architectures place simple cores close to DRAM banks and can yield significant performance and energy improvements…

Hardware Architecture · Computer Science 2022-05-24 Christina Giannoula , Ivan Fernandez , Juan Gómez-Luna , Nectarios Koziris , Georgios Goumas , Onur Mutlu

Sparse compiler is a promising solution for sparse tensor algebra optimization. In compiler implementation, reduction in sparse-dense hybrid algebra plays a key role in performance. Though GPU provides various reduction semantics that can…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-01-10 Genghan Zhang , Yuetong Zhao , Yanting Tao , Zhongming Yu , Guohao Dai , Sitao Huang , Yuan Wen , Pavlos Petoumenos , Yu Wang

Sparse matrix-vector multiplication (SpMV) multiplies a sparse matrix with a dense vector. SpMV plays a crucial role in many applications, from graph analytics to deep learning. The random memory accesses of the sparse matrix make…

Hardware Architecture · Computer Science 2022-05-10 Linghao Song , Yuze Chi , Licheng Guo , Jason Cong

Subgraph matching has garnered increasing attention for its diverse real-world applications. Given the dynamic nature of real-world graphs, addressing evolving scenarios without incurring prohibitive overheads has been a focus of research.…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-31 Linshan Qiu , Lu Chen , Hailiang Jie , Xiangyu Ke , Yunjun Gao , Yang Liu , Zetao Zhang

Sparse general matrix multiplication (SpGEMM) is a fundamental building block in numerous scientific applications. One critical task of SpGEMM is to compute or predict the structure of the output matrix (i.e., the number of nonzero elements…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-07-29 Zhaoyang Du , Yijin Guan , Tianchan Guan , Dimin Niu , Nianxiong Tan , Xiaopeng Yu , Hongzhong Zheng , Jianyi Meng , Xiaolang Yan , Yuan Xie

Graph analytics are vital in fields such as social networks, biomedical research, and graph neural networks (GNNs). However, traditional CPUs and GPUs struggle with the memory bottlenecks caused by large graph datasets and their…

Hardware Architecture · Computer Science 2024-11-25 Oluwole Jaiyeoba , Abdullah T. Mughrabi , Morteza Baradaran , Beenish Gul , Kevin Skadron

Sparse Matrix-Matrix Multiplication (SpMM) is a fundamental kernel across scientific computing and machine learning. While prior work accelerates SpMM using Tensor Cores, no existing sparse kernel exploits the asynchronous features of…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-04-21 Jie Liu , Huanzhi Pu , Zhiru Zhang

The GEneral Matrix Multiplication (GEMM) is one of the essential algorithms in scientific computing. Single-thread GEMM implementations are well-optimised with techniques like blocking and autotuning. However, due to the complexity of…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-15 Yufan Xia , Marco De La Pierre , Amanda S. Barnard , Giuseppe Maria Junior Barca

Recently, graphics processors (GPUs) have been increasingly leveraged in a variety of scientific computing applications. However, architectural differences between CPUs and GPUs necessitate the development of algorithms that take advantage…

Mathematical Software · Computer Science 2015-01-05 Jonathan Wong , Ellen Kuhl , Eric Darve