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The transformer structure employed in large language models (LLMs), as a specialized category of deep neural networks (DNNs) featuring attention mechanisms, stands out for their ability to identify and highlight the most relevant aspects of…

Computer Vision and Pattern Recognition · Computer Science 2024-05-03 Matin Mortaheb , Erciyes Karakaya , Mohammad A. Amir Khojastepour , Sennur Ulukus

Decoding functional magnetic resonance imaging (fMRI) signals into text has been a key challenge in the neuroscience community, with the potential to advance brain-computer interfaces and uncover deeper insights into brain mechanisms.…

Neurons and Cognition · Quantitative Biology 2025-06-10 Weikang Qiu , Zheng Huang , Haoyu Hu , Aosong Feng , Yujun Yan , Rex Ying

Finding an appropriate representation of dynamic activities in the brain is crucial for many downstream applications. Due to its highly dynamic nature, temporally averaged fMRI (functional magnetic resonance imaging) can only provide a…

Machine Learning · Computer Science 2022-08-18 Sikun Lin , Shuyun Tang , Scott Grafton , Ambuj Singh

Transformers have dominated the field of natural language processing, and recently impacted the computer vision area. In the field of medical image analysis, Transformers have also been successfully applied to full-stack clinical…

Computer Vision and Pattern Recognition · Computer Science 2022-08-22 Kelei He , Chen Gan , Zhuoyuan Li , Islem Rekik , Zihao Yin , Wen Ji , Yang Gao , Qian Wang , Junfeng Zhang , Dinggang Shen

The dispute of how the human brain represents conceptual knowledge has been argued in many scientific fields. Brain imaging studies have shown that the spatial patterns of neural activation in the brain are correlated with thinking about…

Neurons and Cognition · Quantitative Biology 2018-06-15 Subba Reddy Oota , Naresh Manwani , Bapi Raju S

This literature review will discuss the use of deep learning methods for image reconstruction using fMRI data. More specifically, the quality of image reconstruction will be determined by the choice in decoding and reconstruction…

Computer Vision and Pattern Recognition · Computer Science 2021-08-10 Madison Van Horn

Brain decoding is a field of computational neuroscience that uses measurable brain activity to infer mental states or internal representations of perceptual inputs. Therefore, we propose a novel approach to brain decoding that also relies…

Computer Vision and Pattern Recognition · Computer Science 2023-03-23 Matteo Ferrante , Tommaso Boccato , Nicola Toschi

The human brain is a complex, dynamic network, which is commonly studied using functional magnetic resonance imaging (fMRI) and modeled as network of Regions of interest (ROIs) for understanding various brain functions. Recent studies…

Quantitative Methods · Quantitative Biology 2024-06-26 Yifan Yang , Yutong Mao , Xufu Liu , Xiao Liu

We present a simple deep learning-based framework commonly used in computer vision and demonstrate its effectiveness for cross-dataset transfer learning in mental imagery decoding tasks that are common in the field of Brain-Computer…

Computer Vision and Pattern Recognition · Computer Science 2023-11-29 Pierre Guetschel , Michael Tangermann

With the wide adoption of functional magnetic resonance imaging (fMRI) by cognitive neuroscience researchers, large volumes of brain imaging data have been accumulated in recent years. Aggregating these data to derive scientific insights…

Applications · Statistics 2020-06-01 Ming Bo Cai , Michael Shvartsman , Anqi Wu , Hejia Zhang , Xia Zhu

Convolutional blocks have played a crucial role in advancing medical image segmentation by excelling in dense prediction tasks. However, their inability to effectively capture long-range dependencies has limited their performance.…

Image and Video Processing · Electrical Eng. & Systems 2026-03-17 Siddhartha Mallick , Aayushman Ghosh , Jayanta Paul , Jaya Sil

Multi-modal MR imaging is routinely used in clinical practice to diagnose and investigate brain tumors by providing rich complementary information. Previous multi-modal MRI segmentation methods usually perform modal fusion by concatenating…

Image and Video Processing · Electrical Eng. & Systems 2022-09-01 Zhaohu Xing , Lequan Yu , Liang Wan , Tong Han , Lei Zhu

Understanding functional representations within higher visual cortex is a fundamental question in computational neuroscience. While artificial neural networks pretrained on large-scale datasets exhibit striking representational alignment…

Brain decoding techniques are essential for understanding the neurocognitive system. Although numerous methods have been introduced in this field, accurately aligning complex external stimuli with brain activities remains a formidable…

Neurons and Cognition · Quantitative Biology 2024-07-16 Heng Huang , Lin Zhao , Zihao Wu , Xiaowei Yu , Jing Zhang , Xintao Hu , Dajiang Zhu , Tianming Liu

Reconstructing perceived images from human brain activity monitored by functional magnetic resonance imaging (fMRI) is hard, especially for natural images. Existing methods often result in blurry and unintelligible reconstructions with low…

Computer Vision and Pattern Recognition · Computer Science 2022-05-31 Mali Halac , Murat Isik , Hasan Ayaz , Anup Das

Resting-state functional magnetic resonance imaging (rs-fMRI) can reflect spontaneous neural activities in brain and is widely used for brain disorder analysis.Previous studies propose to extract fMRI representations through diverse…

Quantitative Methods · Quantitative Biology 2023-06-27 Qianqian Wang , Wei Wang , Yuqi Fang , P. -T. Yap , Hongtu Zhu , Hong-Jun Li , Lishan Qiao , Mingxia Liu

We propose a unified deep meta-learning framework for accelerated magnetic resonance imaging (MRI) that jointly addresses multi-coil reconstruction and cross-modality synthesis. Motivated by the limitations of conventional methods in…

Optimization and Control · Mathematics 2026-03-10 Merham Fouladvand , Peuroly Batra

This paper introduces an innovative multi-modal fusion deep learning approach to overcome the drawbacks of traditional single-modal recognition techniques. These drawbacks include incomplete information and limited diagnostic accuracy.…

Computer Vision and Pattern Recognition · Computer Science 2024-06-28 Xiaoyi Liu , Hongjie Qiu , Muqing Li , Zhou Yu , Yutian Yang , Yafeng Yan

We propose a unified optimization framework that combines neural networks with dictionary learning to model complex interactions between resting state functional MRI and behavioral data. The dictionary learning objective decomposes patient…

Machine Learning · Computer Science 2024-11-21 Niharika Shimona D'Souza , Mary Beth Nebel , Nicholas Wymbs , Stewart Mostofsky , Archana Venkataraman

The mechanism of connecting multimodal signals through self-attention operation is a key factor in the success of multimodal Transformer networks in remote sensing data fusion tasks. However, traditional approaches assume access to all…

Computer Vision and Pattern Recognition · Computer Science 2023-04-25 Yuxing Chen , Maofan Zhao , Lorenzo Bruzzone