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We use methods from computational algebraic topology to study functional brain networks, in which nodes represent brain regions and weighted edges encode the similarity of fMRI time series from each region. With these tools, which allow one…

Quantitative Methods · Quantitative Biology 2020-08-27 Bernadette J. Stolz , Tegan Emerson , Satu Nahkuri , Mason A. Porter , Heather A. Harrington

How does the mind organize thoughts? The hippocampal-entorhinal complex is thought to support domain-general representation and processing of structural knowledge of arbitrary state, feature and concept spaces. In particular, it enables the…

Artificial Intelligence · Computer Science 2022-02-24 Paul Stoewer , Christian Schlieker , Achim Schilling , Claus Metzner , Andreas Maier , Patrick Krauss

This paper proposes a brain-inspired approach to quantum machine learning with the goal of circumventing many of the complications of other approaches. The fact that quantum processes are unitary presents both opportunities and challenges.…

Machine Learning · Computer Science 2019-05-16 Bruce MacLennan

We propose a novel approach for preserving topological structures of the input space in latent representations of autoencoders. Using persistent homology, a technique from topological data analysis, we calculate topological signatures of…

Machine Learning · Computer Science 2021-06-01 Michael Moor , Max Horn , Bastian Rieck , Karsten Borgwardt

Persistent homology is a powerful tool for characterizing the topology of a data set at various geometric scales. When applied to the description of molecular structures, persistent homology can capture the multiscale geometric features and…

Quantitative Methods · Quantitative Biology 2018-07-31 Zixuan Cang , Guo-Wei Wei

Learning with neural networks from a continuous stream of visual information presents several challenges due to the non-i.i.d. nature of the data. However, it also offers novel opportunities to develop representations that are consistent…

Computer Vision and Pattern Recognition · Computer Science 2024-09-19 Simone Marullo , Matteo Tiezzi , Marco Gori , Stefano Melacci

Characterizing the structural properties of neural networks is crucial yet poorly understood, and there are no well-established similarity measures between networks. In this work, we observe that neural networks can be represented as…

Machine Learning · Computer Science 2021-06-01 David Pérez-Fernández , Asier Gutiérrez-Fandiño , Jordi Armengol-Estapé , Marta Villegas

In this work, we introduce a novel approach based on algebraic topology to enhance graph convolution and attention modules by incorporating local topological properties of the data. To do so, we consider the framework of sheaf neural…

Machine Learning · Computer Science 2023-11-20 Gabriele Cesa , Arash Behboodi

Representing 3D surfaces as level sets of continuous functions over $\mathbb{R}^3$ is the common denominator of neural implicit representations, which recently enabled remarkable progress in geometric deep learning and computer vision…

Computer Vision and Pattern Recognition · Computer Science 2023-03-20 Daniele Baieri , Stefano Esposito , Filippo Maggioli , Emanuele Rodolà

Recently, it was found that there is a remarkable intuitive similarity between studies in theoretical computer science dealing with large data sets on the one hand, and categorical methods of topology and geometry in pure mathematics, on…

Algebraic Geometry · Mathematics 2019-10-23 Yuri I. Manin , Matilde Marcolli

The field of mathematical morphology offers well-studied techniques for image processing. In this work, we view morphological operations through the lens of persistent homology, a tool at the heart of the field of topological data analysis.…

Computational Geometry · Computer Science 2021-03-25 Yu-Min Chung , Sarah Day , Chuan-Shen Hu

While many approaches to make neural networks more fathomable have been proposed, they are restricted to interrogating the network with input data. Measures for characterizing and monitoring structural properties, however, have not been…

Machine Learning · Computer Science 2019-09-30 Bastian Rieck , Matteo Togninalli , Christian Bock , Michael Moor , Max Horn , Thomas Gumbsch , Karsten Borgwardt

Topological features based on persistent homology capture high-order structural information so as to augment graph neural network methods. However, computing extended persistent homology summaries remains slow for large and dense graphs and…

Machine Learning · Computer Science 2022-11-16 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

In-memory computing is an emerging computing paradigm that could enable deeplearning inference at significantly higher energy efficiency and reduced latency. The essential idea is to map the synaptic weights corresponding to each layer to…

Machine Learning · Computer Science 2019-06-11 Martino Dazzi , Abu Sebastian , Pier Andrea Francese , Thomas Parnell , Luca Benini , Evangelos Eleftheriou

This paper proposes Hamiltonian Learning, a novel unified framework for learning with neural networks "over time", i.e., from a possibly infinite stream of data, in an online manner, without having access to future information. Existing…

Machine Learning · Computer Science 2024-09-19 Stefano Melacci , Alessandro Betti , Michele Casoni , Tommaso Guidi , Matteo Tiezzi , Marco Gori

In this paper, we study the problem of using representation learning to assist information diffusion prediction on graphs. In particular, we aim at estimating the probability of an inactive node to be activated next in a cascade. Despite…

Machine Learning · Computer Science 2017-12-01 Jia Wang , Vincent W. Zheng , Zemin Liu , Kevin Chen-Chuan Chang

We study the problem of learning representations with controllable connectivity properties. This is beneficial in situations when the imposed structure can be leveraged upstream. In particular, we control the connectivity of an…

Machine Learning · Computer Science 2019-06-24 Christoph Hofer , Roland Kwitt , Mandar Dixit , Marc Niethammer

We characterize structures such as monotonicity, convexity, and modality in smooth regression curves using persistent homology. Persistent homology is a key tool in topological data analysis that detects higher-dimensional topological…

Algebraic Topology · Mathematics 2025-10-28 Satish Kumar , Subhra Sankar Dhar

Persistent homology is a popular and powerful tool for capturing topological features of data. Advances in algorithms for computing persistent homology have reduced the computation time drastically -- as long as the algorithm does not…

Computational Geometry · Computer Science 2013-10-03 Ulrich Bauer , Michael Kerber , Jan Reininghaus

Contemporary ML separates the static structure of parameters from the dynamic flow of inference, yielding systems that lack the sample efficiency and thermodynamic frugality of biological cognition. In this theoretical work, we propose…

Machine Learning · Computer Science 2025-12-09 Xin Li