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The remarkable success of large language models has been driven by dense models trained on massive unlabeled, unstructured corpora. These corpora typically contain text from diverse, heterogeneous sources, but information about the source…

Computation and Language · Computer Science 2022-05-04 Alexandra Chronopoulou , Matthew E. Peters , Jesse Dodge

Graph neural networks (GNNs) have emerged as powerful tools for learning protein structures by capturing spatial relationships at the residue level. However, existing GNN-based methods often face challenges in learning multiscale…

Machine Learning · Computer Science 2026-02-03 Shih-Hsin Wang , Yuhao Huang , Taos Transue , Justin Baker , Jonathan Forstater , Thomas Strohmer , Bao Wang

The emergence of graph foundation models (GFMs), particularly those incorporating language models (LMs), has revolutionized graph learning and demonstrated remarkable performance on text-attributed graphs (TAGs). However, compared to…

Cryptography and Security · Computer Science 2025-10-17 Xiaoyu Xue , Yuni Lai , Chenxi Huang , Yulin Zhu , Gaolei Li , Xiaoge Zhang , Kai Zhou

As one of the fundamental tasks in computer vision, semantic segmentation plays an important role in real world applications. Although numerous deep learning models have made notable progress on several mainstream datasets with the rapid…

Computer Vision and Pattern Recognition · Computer Science 2020-10-06 Bin Zhang , Shengjie Zhao , Rongqing Zhang

Interpretable Graph Neural Networks (GNNs) aim to reveal the underlying reasoning behind model predictions, attributing their decisions to specific subgraphs that are informative. However, existing subgraph-based interpretable methods…

Machine Learning · Computer Science 2025-05-02 Jie Yang , Yuwen Wang , Kaixuan Chen , Tongya Zheng , Yihe Zhou , Zhenbang Xiao , Ji Cao , Mingli Song , Shunyu Liu

Large language models (LLMs) have demonstrated promising capabilities in Text-Attributed Graph (TAG) understanding. Recent studies typically focus on verbalizing the graph structures via handcrafted prompts, feeding the target node and its…

Artificial Intelligence · Computer Science 2026-01-21 Zijun Di , Bin Lu , Huquan Kang , Luoyi Fu , Jiaxin Ding , Xiaoying Gan , Lei Zhou , Xinbing Wang , Chenghu Zhou

Given the ubiquity of graph data and its applications in diverse domains, building a Graph Foundation Model (GFM) that can work well across different graphs and tasks with a unified backbone has recently garnered significant interests. A…

Machine Learning · Computer Science 2024-06-18 Zhikai Chen , Haitao Mao , Jingzhe Liu , Yu Song , Bingheng Li , Wei Jin , Bahare Fatemi , Anton Tsitsulin , Bryan Perozzi , Hui Liu , Jiliang Tang

Modern sequence models (e.g., Transformers, linear RNNs, etc.) emerged as dominant backbones of recent deep learning frameworks, mainly due to their efficiency, representational power, and/or ability to capture long-range dependencies.…

Machine Learning · Computer Science 2024-11-26 Ali Behrouz , Ali Parviz , Mahdi Karami , Clayton Sanford , Bryan Perozzi , Vahab Mirrokni

Domain generalization (DG) aims to adapt a model using one or multiple source domains to ensure robust performance in unseen target domains. Recently, Parameter-Efficient Fine-Tuning (PEFT) of foundation models has shown promising results…

Computer Vision and Pattern Recognition · Computer Science 2025-03-24 Seokju Yun , Seunghye Chae , Dongheon Lee , Youngmin Ro

Seismic data often face challenges in their utilization due to noise contamination, incomplete acquisition, and limited low-frequency information, which hinder accurate subsurface imaging and interpretation. Traditional processing methods…

Geophysics · Physics 2025-02-04 Shijun Cheng , Randy Harsuko , Tariq Alkhalifah

Graph-structured data underpins many critical applications. While foundation models have transformed language and vision via large-scale pretraining and lightweight adaptation, extending this paradigm to general, real-world graphs is…

Machine Learning · Computer Science 2026-05-22 Maya Bechler-Speicher , Yoel Gottlieb , Andrey Isakov , David Abensur , Ami Tavory , Daniel Haimovich , Ido Guy , Udi Weinsberg

Graph Neural Networks (GNNs) have achieved remarkable performance in a wide range of graph-related learning tasks. However, explaining their predictions remains a challenging problem, especially due to the mismatch between the graphs used…

Machine Learning · Computer Science 2025-08-05 Zhuomin Chen , Jingchao Ni , Hojat Allah Salehi , Xu Zheng , Dongsheng Luo

Hypergraph neural networks (HGNNs) effectively model complex high-order relationships in domains like protein interactions and social networks by connecting multiple vertices through hyperedges, enhancing modeling capabilities, and reducing…

Machine Learning · Computer Science 2025-12-08 Yue Gao , Yifan Feng , Shiquan Liu , Xiangmin Han , Shaoyi Du , Zongze Wu , Han Hu

Recently, graph neural networks (GNNs) have shown prominent performance in graph representation learning by leveraging knowledge from both graph structure and node features. However, most of them have two major limitations. First, GNNs can…

Machine Learning · Computer Science 2022-06-20 Wentao Zhang , Zeang Sheng , Mingyu Yang , Yang Li , Yu Shen , Zhi Yang , Bin Cui

Graph Neural Networks (GNNs) have achieved significant success in addressing node classification tasks. However, the effectiveness of traditional GNNs degrades on heterophilic graphs, where connected nodes often belong to different labels…

Machine Learning · Computer Science 2025-11-11 Asela Hevapathige , Asiri Wijesinghe , Ahad N. Zehmakan

Speech foundation models (SFMs) are increasingly hailed as powerful computational models of human speech perception. However, since their representations are inherently black-box, it remains unclear what drives their alignment with brain…

Neurons and Cognition · Quantitative Biology 2025-09-26 Riki Shimizu , Richard J. Antonello , Chandan Singh , Nima Mesgarani

Vision Foundation Models(VFMs) have achieved remarkable success in various computer vision tasks. However, their application to semantic segmentation is hindered by two significant challenges: (1) the disparity in data scale, as…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Zhixiang Wei , Xiaoxiao Ma , Ruishen Yan , Tao Tu , Huaian Chen , Jinjin Zheng , Yi Jin , Enhong Chen

Unsupervised domain adaptation for semantic segmentation aims to make models trained on synthetic data (source domain) adapt to real images (target domain). Previous feature-level adversarial learning methods only consider adapting models…

Computer Vision and Pattern Recognition · Computer Science 2021-09-21 Hongruixuan Chen , Chen Wu , Yonghao Xu , Bo Du

Pre-trained graph models (PGMs) aim to capture transferable inherent structural properties and apply them to different downstream tasks. Similar to pre-trained language models, PGMs also inherit biases from human society, resulting in…

Machine Learning · Computer Science 2024-02-21 Zhongjian Zhang , Mengmei Zhang , Yue Yu , Cheng Yang , Jiawei Liu , Chuan Shi

Graph learning has attracted significant attention due to its widespread real-world applications. Current mainstream approaches rely on text node features and obtain initial node embeddings through shallow embedding learning using GNNs,…

Artificial Intelligence · Computer Science 2025-02-13 Chuanqi Shi , Yiyi Tao , Hang Zhang , Lun Wang , Shaoshuai Du , Yixian Shen , Yanxin Shen
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