Related papers: Extended formulations for the maximum weighted co-…
We study the parameterized complexity of the problems of finding a maximum common (induced) subgraph of two given graphs. Since these problems generalize several NP-complete problems, they are intractable even when parameterized by strongly…
We investigate the tractability of a simple fusion of two fundamental structures on graphs, a spanning tree and a perfect matching. Specifically, we consider the following problem: given an edge-weighted graph, find a minimum-weight…
A Supertree synthesizes the topologies of a set of phylogenetic trees carrying overlapping taxa set. In process, conflicts in the tree topologies are aimed to be resolved with the consensus clades. Such a problem is proved to be NP-hard.…
This paper explores combinatorial optimization for problems of max-weight graph matching on multi-partite graphs, which arise in integrating multiple data sources. Entity resolution-the data integration problem of performing noisy joins on…
We initiate the study of computational complexity of graph coverings, aka locally bijective graph homomorphisms, for {\em graphs with semi-edges}. The notion of graph covering is a discretization of coverings between surfaces or topological…
We resolve the longstanding open problem concerning the computational complexity of Max Cut on interval graphs by showing that it is NP-complete.
We consider extension variants of the classical graph problems Vertex Cover and Independent Set. Given a graph $G=(V,E)$ and a vertex set $U \subseteq V$, it is asked if there exists a minimal vertex cover (resp.\ maximal independent set)…
The theoretical models providing mathematical abstractions for several significant optimization problems in machine learning, combinatorial optimization, computer vision and statistical physics have intrinsic similarities. We propose a…
Threshold graphs are recursive deterministic network models that have been proposed for describing certain economic and social interactions. One drawback of this graph family is that it has limited generative attachment rules. To mitigate…
This paper introduces the notion of involution module, the first generalization of the modular decomposition of 2-structure which has a unique linear-sized decomposition tree. We derive an O(n^2) decomposition algorithm and we take…
We consider problems of finding a maximum size/weight $t$-matching without forbidden subgraphs in an undirected graph $G$ with the maximum degree bounded by $t+1$, where $t$ is an integer greater than $2$. Depending on the variant forbidden…
We consider the constrained graph alignment problem which has applications in biological network analysis. Given two input graphs $G_1=(V_1,E_1), G_2=(V_2,E_2)$, a pair of vertex mappings induces an {\it edge conservation} if the vertex…
In our paper, we consider the following general problems: check feasibility, count the number of feasible solutions, find an optimal solution, and count the number of optimal solutions in $P \cap Z^n$, assuming that $P$ is a polyhedron,…
The maximum/minimum bisection problems are, given an edge-weighted graph, to find a bipartition of the vertex set into two sets whose sizes differ by at most one, such that the total weight of edges between the two sets is…
Finding locally optimal solutions for max-cut and max-$k$-cut are well-known PLS-complete problems. An instinctive approach to finding such a locally optimum solution is the FLIP method. Even though FLIP requires exponential time in…
In a bipartite graph, a subgraph is an $s$-biplex if each vertex of the subgraph is adjacent to all but at most $s$ vertices on the opposite set. The enumeration of $s$-biplexes from a given graph is a fundamental problem in bipartite graph…
The Total Matching Polytope generalizes the Stable Set Polytope and the Matching Polytope. In this paper, we give the perfect formulation for Trees and we derive two new families of valid inequalities, the balanced biclique inequalities…
The complexity of the graph isomorphism problem for trapezoid graphs has been open over a decade. This paper shows that the problem is GI-complete. More precisely, we show that the graph isomorphism problem is GI-complete for comparability…
Topological drawings are natural representations of graphs in the plane, where vertices are represented by points, and edges by curves connecting the points. Topological drawings of complete graphs and of complete bipartite graphs have been…
We give a combinatorial polynomial-time algorithm to find a maximum weight independent set in perfect graphs of bounded degree that do not contain a prism or a hole of length four as an induced subgraph. An even pair in a graph is a pair of…