Related papers: Function-Correcting Codes for Insertion-Deletion C…
Synthetic DNA can in principle be used for the archival storage of arbitrary data. Because errors are introduced during DNA synthesis, storage, and sequencing, an error-correcting code (ECC) is necessary for error-free recovery of the data.…
Function-correcting codes were introduced in the work "Function-Correcting Codes" (FCC) by Lenz et al. 2023, which provides a graphical representation for the problem of constructing function-correcting codes. We use this function dependent…
This paper studies the problem of constructing codes correcting deletions in arrays. Under this model, it is assumed that an $n\times n$ array can experience deletions of rows and columns. These deletion errors are referred to as…
We introduce generalized function-correcting partition codes (GFCPCs) that simultaneously protect multiple partitions of the message space against different numbers of errors. Given partitions with respective distance requirements, a GFCPC…
In this work, we consider the problem of efficient decoding of codes from insertions and deletions. Most of the known efficient codes are codes with synchronization strings which allow one to reduce the problem of decoding insertions and…
Function-correcting codes (FCCs) protect specific function evaluations of a message against errors. This condition imposes a less stringent distance requirement than classical error-correcting codes (ECCs), allowing for reduced redundancy.…
We consider the problem of correcting insertion and deletion errors in the $d$-dimensional space. This problem is well understood for vectors (one-dimensional space) and was recently studied for arrays (two-dimensional space). For vectors…
DNA storage has emerged as a promising solution for large-scale and long-term data preservation. Among various error types, insertions are the most frequent errors occurring in DNA sequences, where the inserted symbol is often identical or…
This work continues the study of linear error correcting codes against adversarial insertion deletion errors (insdel errors). Previously, the work of Cheng, Guruswami, Haeupler, and Li \cite{CGHL21} showed the existence of asymptotically…
Due to its higher data density, longevity, energy efficiency, and ease of generating copies, DNA is considered a promising storage technology for satisfying future needs. However, a diverse set of errors including deletions, insertions,…
Nanopore sequencers are emerging as promising new platforms for high-throughput sequencing. As with other technologies, sequencer errors pose a major challenge for their effective use. In this paper, we present a novel information theoretic…
The deletion channel is known to be a notoriously diffcult channel to design error-correction codes for. In spite of this difficulty, there are some beautiful code constructions which give some intuition about the channel and about what…
The problem of error-control in random linear network coding is considered. A ``noncoherent'' or ``channel oblivious'' model is assumed where neither transmitter nor receiver is assumed to have knowledge of the channel transfer…
In this paper, a new problem of transmitting information over the adversarial insertion-deletion channel with feedback is introduced. Suppose that the encoder transmits $n$ binary symbols one-by-one over a channel, in which some symbols can…
Insdel errors occur in communication systems caused by the loss of positional information of the message. Since the work by Guruswami and Wang, there have been some further investigations on the list decoding of insertion codes, deletion…
Consider two or more strings $\mathbf{x}^1,\mathbf{x}^2,\ldots,$ that are concatenated to form $\mathbf{x}=\langle \mathbf{x}^1,\mathbf{x}^2,\ldots \rangle$. Suppose that up to $\delta$ deletions occur in each of the concatenated strings.…
This paper introduces a new solution to DNA storage that integrates all three steps of retrieval, namely clustering, reconstruction, and error correction. DNA-correcting codes are presented as a unique solution to the problem of ensuring…
This paper investigates the problem of correcting multiple criss-cross insertions and deletions in arrays. More precisely, we study the unique recovery of $n \times n$ arrays affected by $t$-criss-cross deletions defined as any combination…
The present paper mainly studies limits and constructions of insertion and deletion (insdel for short) codes. The paper can be divided into two parts. The first part focuses on various bounds, while the second part concentrates on…
The Damerau-Levenshtein distance between two sequences is the minimum number of operations (deletions, insertions, substitutions, and adjacent transpositions) required to convert one sequence into another. Notwithstanding a long history of…