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Graph Neural Networks (GNNs) are powerful at solving graph classification tasks, yet applied problems often contain noisy labels. In this work, we study GNN robustness to label noise, demonstrate GNN failure modes when models struggle to…

Oversmoothing is a common phenomenon observed in graph neural networks (GNNs), in which an increase in the network depth leads to a deterioration in their performance. Graph contrastive learning (GCL) is emerging as a promising way of…

Machine Learning · Computer Science 2024-02-26 Jintang Li , Wangbin Sun , Ruofan Wu , Yuchang Zhu , Liang Chen , Zibin Zheng

Graph convolutional networks (GCNs) have shown promising results in processing graph data by extracting structure-aware features. This gave rise to extensive work in geometric deep learning, focusing on designing network architectures that…

Machine Learning · Computer Science 2022-01-20 Yimeng Min , Frederik Wenkel , Guy Wolf

Graph Neural Networks (GNNs) have succeeded in various computer science applications, yet deep GNNs underperform their shallow counterparts despite deep learning's success in other domains. Over-smoothing and over-squashing are key…

Machine Learning · Computer Science 2023-08-14 Jhony H. Giraldo , Konstantinos Skianis , Thierry Bouwmans , Fragkiskos D. Malliaros

It is known that the current graph neural networks (GNNs) are difficult to make themselves deep due to the problem known as over-smoothing. Multi-scale GNNs are a promising approach for mitigating the over-smoothing problem. However, there…

Machine Learning · Computer Science 2021-01-07 Kenta Oono , Taiji Suzuki

Despite extensive research efforts focused on OOD detection on images, OOD detection on nodes in graph learning remains underexplored. The dependence among graph nodes hinders the trivial adaptation of existing approaches on images that…

Machine Learning · Computer Science 2025-03-18 Yuhan Chen , Yihong Luo , Yifan Song , Pengwen Dai , Jing Tang , Xiaochun Cao

A common issue in Graph Neural Networks (GNNs) is known as over-smoothing. By increasing the number of iterations within the message-passing of GNNs, the nodes' representations of the input graph align with each other and become…

Machine Learning · Computer Science 2021-10-22 Christian M. M. Frey , Yunpu Ma , Matthias Schubert

Spectral Graph Neural Networks (GNNs) suffer from two critical limitations: poor performance on "heterophilic" graphs and performance collapse at high polynomial degrees (K), known as over-smoothing. Both issues stem from the static,…

Machine Learning · Computer Science 2025-11-20 Huseyin Goksu

Graph Neural Network (GNN) achieves great success for node-level and graph-level tasks via encoding meaningful topological structures of networks in various domains, ranging from social to biological networks. However, repeated aggregation…

Machine Learning · Computer Science 2025-08-26 Tanvir Hossain , Khaled Mohammed Saifuddin , Muhammad Ifte Khairul Islam , Farhan Tanvir , Esra Akbas

Graph neural networks (GNNs) are designed to process data associated with graphs. They are finding an increasing range of applications; however, as with other modern machine learning techniques, their theoretical understanding is limited.…

Disordered Systems and Neural Networks · Physics 2026-02-23 O. Duranthon , L. Zdeborová

Graph neural networks (GNNs) have become pivotal tools for processing graph-structured data, leveraging the message passing scheme as their core mechanism. However, traditional GNNs often grapple with issues such as instability,…

Spectral Theory · Mathematics 2026-05-20 Yuanhong Jiang , Dongmian Zou , Xiaoqun Zhang , Yu Guang Wang

We consider weighted graphs with an infinite set of vertices. We show that boundedness of all functions of finite energy can be seen as a notion of `relative compactness' for such graphs and study sufficient and necessary conditions for…

In recent years, Graph Neural Networks (GNNs) have shown superior performance on diverse applications on real-world datasets. To improve the model capacity and alleviate the over-smoothing problem, several methods proposed to incorporate…

Machine Learning · Computer Science 2021-12-28 Lanning Wei , Huan Zhao , Zhiqiang He

Message Passing Neural Networks (MPNNs) hold a key position in machine learning on graphs, but they struggle with unintended behaviors, such as over-smoothing and over-squashing, due to irregular data structures. The observation and…

Machine Learning · Computer Science 2025-08-26 Junhyun Lee , Veronika Thost , Bumsoo Kim , Jaewoo Kang , Tengfei Ma

Graph Convolution Networks (GCN) are widely used in learning graph representations due to their effectiveness and efficiency. However, they suffer from the notorious over-smoothing problem, in which the learned representations of densely…

Machine Learning · Computer Science 2020-04-10 Xin Xin , Alexandros Karatzoglou , Ioannis Arapakis , Joemon M. Jose

We study $\Gamma$-convergence of graph Dirichlet energies and spectral convergence of graph Laplacians on unions of intersecting manifolds of potentially different dimensions. Our investigation is motivated by problems of machine learning,…

Analysis of PDEs · Mathematics 2025-09-30 Leon Bungert , Dejan Slepčev

Graph Neural Networks (GNNs) have achieved great success in various graph mining tasks.However, drastic performance degradation is always observed when a GNN is stacked with many layers. As a result, most GNNs only have shallow…

Machine Learning · Computer Science 2022-06-10 Wentao Zhang , Zeang Sheng , Ziqi Yin , Yuezihan Jiang , Yikuan Xia , Jun Gao , Zhi Yang , Bin Cui

In recent years, Graph Neural Networks (GNNs) have been popular in the graph classification task. Currently, shallow GNNs are more common due to the well-known over-smoothing problem facing deeper GNNs. However, they are sub-optimal without…

Machine Learning · Computer Science 2023-02-20 Lanning Wei , Zhiqiang He , Huan Zhao , Quanming Yao

Graph Convolutional Networks (GCNs) suffer from performance degradation when models go deeper. However, earlier works only attributed the performance degeneration to over-smoothing. In this paper, we conduct theoretical and experimental…

Machine Learning · Computer Science 2024-01-24 Weigang Lu , Yibing Zhan , Binbin Lin , Ziyu Guan , Liu Liu , Baosheng Yu , Wei Zhao , Yaming Yang , Dacheng Tao

Graph neural networks (GNNs) have received tremendous attention due to their superiority in learning node representations. These models rely on message passing and feature transformation functions to encode the structural and feature…

Machine Learning · Computer Science 2021-12-02 Kai Guo , Kaixiong Zhou , Xia Hu , Yu Li , Yi Chang , Xin Wang
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