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Sparse Autoencoders (SAEs) have emerged as a popular tool for interpreting the hidden states of large language models (LLMs). By learning to reconstruct activations from a sparse bottleneck layer, SAEs discover interpretable features from…

Computer Vision and Pattern Recognition · Computer Science 2025-09-19 Matthew Lyle Olson , Musashi Hinck , Neale Ratzlaff , Changbai Li , Phillip Howard , Vasudev Lal , Shao-Yen Tseng

Sparse autoencoders (SAEs) have become a standard tool for mechanistic interpretability in autoregressive large language models (LLMs), enabling researchers to extract sparse, human-interpretable features and intervene on model behavior.…

Machine Learning · Computer Science 2026-02-06 Xu Wang , Bingqing Jiang , Yu Wan , Baosong Yang , Lingpeng Kong , Difan Zou

VAEs (Variational AutoEncoders) have proved to be powerful in the context of density modeling and have been used in a variety of contexts for creative purposes. In many settings, the data we model possesses continuous attributes that we…

Machine Learning · Computer Science 2017-07-18 Gaëtan Hadjeres , Frank Nielsen , François Pachet

Generative self-supervised learning (SSL), especially masked autoencoders, has become one of the most exciting learning paradigms and has shown great potential in handling graph data. However, real-world graphs are always heterogeneous,…

Machine Learning · Computer Science 2023-02-13 Yijun Tian , Kaiwen Dong , Chunhui Zhang , Chuxu Zhang , Nitesh V. Chawla

Large Language Models (LLMs) have transformed natural language processing, yet their internal mechanisms remain largely opaque. Recently, mechanistic interpretability has attracted significant attention from the research community as a…

Machine Learning · Computer Science 2025-09-24 Dong Shu , Xuansheng Wu , Haiyan Zhao , Daking Rai , Ziyu Yao , Ninghao Liu , Mengnan Du

Model internals encode rich information about how a large language model (LLM) processes its training data; however, post-training data engineering largely relies on external signals and ignores rich intrinsic signals lying in model…

Machine Learning · Computer Science 2026-05-27 Yi Jing , Zao Dai , Jinwu Hu , Zijun Yao , Lei Hou , Juanzi Li , Xiaozhi Wang

Self-supervised learning (SSL) has been extensively explored in recent years. Particularly, generative SSL has seen emerging success in natural language processing and other AI fields, such as the wide adoption of BERT and GPT. Despite…

Machine Learning · Computer Science 2022-07-14 Zhenyu Hou , Xiao Liu , Yukuo Cen , Yuxiao Dong , Hongxia Yang , Chunjie Wang , Jie Tang

Sparse autoencoders (SAEs) have recently emerged as a powerful tool for interpreting the internal representations of large language models (LLMs), revealing latent latent features with semantical meaning. This interpretability has also…

Other Quantitative Biology · Quantitative Biology 2025-07-11 Haoxiang Guan , Jiyan He , Jie Zhang

Counterfactual explanations (CEs) provide recourse recommendations for individuals affected by algorithmic decisions. A key challenge is generating CEs that are robust against various perturbation types (e.g. input and model perturbations)…

Machine Learning · Computer Science 2026-03-02 Junqi Jiang , Francesco Leofante , Antonio Rago , Francesca Toni

Fine-grained steering of language model outputs is essential for safety and reliability. Prompting and finetuning are widely used to achieve these goals, but interpretability researchers have proposed a variety of representation-based…

Computation and Language · Computer Science 2025-03-05 Zhengxuan Wu , Aryaman Arora , Atticus Geiger , Zheng Wang , Jing Huang , Dan Jurafsky , Christopher D. Manning , Christopher Potts

Sparse autoencoders (SAEs) have emerged as a powerful tool for interpreting large language models (LLMs) by decomposing token activations into combinations of human-understandable features. While SAEs provide crucial insights into LLM…

Machine Learning · Computer Science 2025-11-11 Zhen Xu , Zhen Tan , Song Wang , Kaidi Xu , Tianlong Chen

Masked graph autoencoder (MGAE) has emerged as a promising self-supervised graph pre-training (SGP) paradigm due to its simplicity and effectiveness. However, existing efforts perform the mask-then-reconstruct operation in the raw data…

Machine Learning · Computer Science 2023-04-07 Wenxuan Tu , Qing Liao , Sihang Zhou , Xin Peng , Chuan Ma , Zhe Liu , Xinwang Liu , Zhiping Cai

Sparse auto-encoders (SAEs) have re-emerged as a prominent method for mechanistic interpretability, yet they face two significant challenges: the non-smoothness of the $L_1$ penalty, which hinders reconstruction and scalability, and a lack…

Artificial Intelligence · Computer Science 2026-05-19 Ouns El Harzli , Hugo Wallner , Yoonsoo Nam , Haixuan Xavier Tao

We put forth a principled design of a neural architecture to learn nodal Adjacency Spectral Embeddings (ASE) from graph inputs. By bringing to bear the gradient descent (GD) method and leveraging the principle of algorithm unrolling, we…

Machine Learning · Computer Science 2025-08-29 Sofía Pérez Casulo , Marcelo Fiori , Federico Larroca , Gonzalo Mateos

Sparse autoencoders (SAEs) have recently emerged as pivotal tools for introspection into large language models. SAEs can uncover high-quality, interpretable features at different levels of granularity and enable targeted steering of the…

Information Retrieval · Computer Science 2026-01-19 Martin Spišák , Ladislav Peška , Petr Škoda , Vojtěch Vančura , Rodrigo Alves

Sparse autoencoders (SAEs) are a promising technique for decomposing language model activations into interpretable linear features. However, current SAEs fall short of completely explaining model performance, resulting in "dark matter":…

Machine Learning · Computer Science 2025-03-26 Joshua Engels , Logan Riggs , Max Tegmark

Graph neural networks have been used for a variety of learning tasks, such as link prediction, node classification, and node clustering. Among them, link prediction is a relatively under-studied graph learning task, with current…

Machine Learning · Computer Science 2022-08-29 Xinxing Wu , Qiang Cheng

We present SAE-BrainMap, a novel framework that directly aligns deep learning visual model representations with voxel-level fMRI responses using sparse autoencoders (SAEs). First, we train layer-wise SAEs on model activations and compute…

Neurons and Cognition · Quantitative Biology 2025-06-16 Ziming Mao , Jia Xu , Zeqi Zheng , Haofang Zheng , Dabing Sheng , Yaochu Jin , Guoyuan Yang

Sparse autoencoders (SAEs) have been applied to large language models and protein language models, but not systematically to electronic health record (EHR) foundation models. We train TopK SAEs on FlatASCEND, a 14.5-million-parameter…

Machine Learning · Computer Science 2026-05-07 Chris Sainsbury , Feng Dong , Andreas Karwath

We investigate whether sparse autoencoders (SAEs) can be used to remove knowledge from language models. We use the biology subset of the Weapons of Mass Destruction Proxy dataset and test on the gemma-2b-it and gemma-2-2b-it language…

Machine Learning · Computer Science 2024-11-05 Eoin Farrell , Yeu-Tong Lau , Arthur Conmy