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In this paper we show that passive self-assembly in the context of the tile self-assembly model is capable of performing fuel efficient, universal computation. The tile self-assembly model is a premiere model of self-assembly in which…

Data Structures and Algorithms · Computer Science 2012-08-09 Robert Schweller , Michael Sherman

We study the tiling of a two-dimensional region of the plane by $K$-cell one-dimensional tiles, or $K$-mers. Unlike previous studies, which typically allowed for one single value of $K$ or sometimes a small assortment of fixed values, here…

Statistical Mechanics · Physics 2026-02-25 Eduardo J. Aguilar , Valmir C. Barbosa , Raul Donangelo , Welles A. M. Morgado , Sergio R. Souza

One of the most fundamental problems in tiling theory is the domino problem: given a set of tiles and tiling rules, decide if there exists a way to tile the plane using copies of tiles and following their rules. The problem is known to be…

Discrete Mathematics · Computer Science 2024-02-08 Nathalie Aubrun , Manon Blanc , Olivier Bournez

In this paper we are interested in computability aspects of subshifts and in particular Turing degrees of 2-dimensional SFTs (i.e. tilings). To be more precise, we prove that given any \pizu subset $P$ of $\{0,1\}^\NN$ there is a SFT $X$…

Computational Complexity · Computer Science 2012-06-04 Emmanuel Jeandel , Pascal Vanier

The Calisson puzzle is a tiling puzzle in which one must tile a triangular grid inside a hexagon with lozenges, under the constraint that certain prescribed edges remain tile boundaries and that adjacent lozenges along these edges have…

Computational Geometry · Computer Science 2026-03-04 Jean-Marie Favreau , Yan Gerard , Pascal Lafourcade , Léo Robert

Tilt models offer intuitive and clean definitions of complex systems in which particles are influenced by global control commands. Despite a wide range of applications, there has been almost no theoretical investigation into the associated…

Computational Geometry · Computer Science 2025-04-24 Sándor P. Fekete , Peter Kramer , Jan-Marc Reinhardt , Christian Rieck , Christian Scheffer

A finite set of integers $A$ tiles the integers by translations if $\mathbb{Z}$ can be covered by pairwise disjoint translated copies of $A$. Restricting attention to one tiling period, we have $A\oplus B=\mathbb{Z}_M$ for some…

Combinatorics · Mathematics 2022-03-09 Izabella Laba , Itay Londner

Nanomechanical computers promise a greatly improved energetic efficiency compared to their electrical counterparts. However, progress towards this goal is hindered by a lack of modular components, such as logic gates or transistors, and…

Emerging Technologies · Computer Science 2019-10-09 Marc Serra-Garcia

We contribute results for a set of fundamental problems in the context of programmable matter by presenting algorithmic methods for evaluating and manipulating a collective of particles by a finite automaton that can neither store…

Data Structures and Algorithms · Computer Science 2018-10-16 Sándor P. Fekete , Robert Gmyr , Sabrina Hugo , Phillip Keldenich , Christian Scheffer , Arne Schmidt

We study safety verification for multithreaded programs with recursive parallelism (i.e. unbounded thread creation and recursion) as well as unbounded integer variables. Since the threads in each program configuration are structured in a…

Logic in Computer Science · Computer Science 2016-05-24 Matthew Hague , Anthony Widjaja Lin

We consider computations of a Turing machine subjected to noise. In every step, the action (the new state and the new content of the observed cell, the direction of the head movement) can differ from that prescribed by the transition…

Computational Complexity · Computer Science 2021-12-07 Ilir Çapuni , Peter Gács

In general dimension, there is no known total polynomial algorithm for either convex hull or vertex enumeration, i.e. an algorithm whose complexity depends polynomially on the input and output sizes. It is thus important to identify…

Computational Geometry · Computer Science 2021-04-26 Ioannis Z. Emiris , Vissarion Fisikopoulos , Bernd Gärtner

Due to the limitation on computational power of existing computers, the polynomial time does not works for identifying the tractable problems in big data computing. This paper adopts the sublinear time as the new tractable standard to…

Computational Complexity · Computer Science 2019-12-06 Xiangyu Gao , Jianzhong Li , Dongjing Miao , Xianmin Liu

Harnessing the intrinsic dynamics of physical systems for information processing opens new avenues for computation embodied in matter. Using simulations of a model system, we show that assemblies of DNA tiles capable of self-organizing into…

Soft Condensed Matter · Physics 2025-10-23 Tim E. Veenstra , René van Roij , Marjolein Dijkstra

Given a finite collection of two-dimensional tile types, the field of study concerned with covering the plane with tiles of these types exclusively has a long history, having enjoyed great prominence in the last six to seven decades. Much…

Statistical Mechanics · Physics 2024-12-24 Eduardo J. Aguilar , Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza

In this work, we study theoretical models of \emph{programmable matter} systems. The systems under consideration consist of spherical modules, kept together by magnetic forces and able to perform two minimal mechanical operations (or…

Data Structures and Algorithms · Computer Science 2017-03-14 Othon Michail , George Skretas , Paul G. Spirakis

We give a $O(n)$-time algorithm for determining whether translations of a polyomino with $n$ edges can tile the plane. The algorithm is also a $O(n)$-time algorithm for enumerating all such tilings that are also regular, and we prove that…

Computational Geometry · Computer Science 2015-09-23 Andrew Winslow

The outcomes of this paper are twofold. Implicit complexity. We provide an implicit characterization of polynomial time computation in terms of ordinary differential equations: we characterize the class PTIME of languages computable in…

Computational Complexity · Computer Science 2017-05-18 Olivier Bournez , Daniel S. Gracaa , Amaury Pouly

We fully generalize a previously-developed computational geometry tool [1] to perform large-scale simulations of arbitrary two-dimensional faceted surfaces $z = h(x,y)$. Our method uses a three-component facet/edge/junction storage model,…

Mathematical Physics · Physics 2011-10-17 Scott A. Norris , Stephen J. Watson

Clift and Murfet (2019) introduced a naive Bayesian smooth relaxation of Turing machines motivated by work in differential linear logic; this was subsequently used to endow spaces of program codes of bounded length with a smooth manifold…

Logic · Mathematics 2021-06-03 Adrian K. Xu