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We introduce persistence matching diagrams induced by set mappings of metric spaces, based on 0-persistent homology of Vietoris-Rips filtrations. Also, we present a geometric definition of the persistence matching diagram that is more…

Algebraic Topology · Mathematics 2024-09-26 Alvaro Torras-Casas , Rocio Gonzalez-Diaz

Topological features based on persistent homology capture high-order structural information so as to augment graph neural network methods. However, computing extended persistent homology summaries remains slow for large and dense graphs and…

Machine Learning · Computer Science 2022-11-16 Zuoyu Yan , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

Persistent homology (PH) characterizes the shape of brain networks through persistence features. Group comparison of persistence features from brain networks can be challenging as they are inherently heterogeneous. A recent scale-space…

Persistence diagram (PD) bundles, a generalization of vineyards, were introduced as a way to study the persistent homology of a set of filtrations parameterized by a topological space $B$. In this paper, we present an algorithm for…

Algebraic Topology · Mathematics 2023-09-21 Abigail Hickok

Persistent homology (PH) characterizes the shape of brain networks through the persistence features. Group comparison of persistence features from brain networks can be challenging as they are inherently heterogeneous. A recent scale-space…

Methodology · Statistics 2023-11-06 Yuan Wang , Jian Yin , Rutvik H. Desai

The combinatorial interpretation of the persistence diagram as a M\"obius inversion was recently shown to be functorial. We employ this discovery to recast the Persistent Homology Transform of a geometric complex as a representation of a…

Algebraic Topology · Mathematics 2024-05-16 Brittany Terese Fasy , Amit Patel

We present a thorough study of the theoretical properties and devise efficient algorithms for the \emph{persistent Laplacian}, an extension of the standard combinatorial Laplacian to the setting of pairs (or, in more generality, sequences)…

Combinatorics · Mathematics 2022-07-18 Facundo Mémoli , Zhengchao Wan , Yusu Wang

The rich spectral information of the graph Laplacian has been instrumental in graph theory, machine learning, and graph signal processing for applications such as graph classification, clustering, or eigenmode analysis. Recently, the Hodge…

Algebraic Topology · Mathematics 2024-03-27 Vincent P. Grande , Michael T. Schaub

Visualization in the emerging field of topological data analysis has progressed from persistence barcodes and persistence diagrams to display of two-parameter persistent homology. Although persistence barcodes and diagrams have permitted…

Applications · Statistics 2019-01-08 Raoul R. Wadhwa , Andrew Dhawan , Drew F. K. Williamson , Jacob G. Scott

Persistent homology is a powerful mathematical tool that summarizes useful information about the shape of data allowing one to detect persistent topological features while one adjusts the resolution. However, the computation of such…

Quantum Physics · Physics 2022-03-01 Bernardo Ameneyro , Vasileios Maroulas , George Siopsis

We study \emph{dynamic} algorithms for maintaining spectral vertex sparsifiers of graphs with respect to a set of terminals $T$ of our choice. Such objects preserve pairwise resistances, solutions to systems of linear equations, and energy…

Data Structures and Algorithms · Computer Science 2019-06-26 David Durfee , Yu Gao , Gramoz Goranci , Richard Peng

Persistent homology is a topological data analysis tool that has been widely generalized, extending its scope beyond the field of topology. Among its extensions, steady and ranging persistence were developed to study a wide variety of graph…

Algebraic Topology · Mathematics 2026-05-15 Yann-Situ Gazull

Point signatures based on the Laplacian operators on graphs, point clouds, and manifolds have become popular tools in machine learning for graphs, clustering, and shape analysis. In this work, we propose a novel point signature, the power…

Machine Learning · Statistics 2025-03-17 Karamatou Yacoubou Djima , Ka Man Yim

Recently, topological data analysis has become a trending topic in data science and engineering. However, the key technique of topological data analysis, i.e., persistent homology, is defined on point cloud data, which does not work…

Differential Geometry · Mathematics 2024-11-08 Zhe Su , Yiying Tong , Guo-Wei Wei

Link prediction (LP), inferring the connectivity between nodes, is a significant research area in graph data, where a link represents essential information on relationships between nodes. Although graph neural network (GNN)-based models…

Machine Learning · Computer Science 2025-12-12 Junwon You , Eunwoo Heo , Jae-Hun Jung

Persistence diagrams offer a way to summarize topological and geometric properties latent in datasets. While several methods have been developed that utilize persistence diagrams in statistical inference, a full Bayesian treatment remains…

Methodology · Statistics 2019-08-08 Vasileios Maroulas , Farzana Nasrin , Christopher Oballe

We investigate a variational method for ill-posed problems, named $\texttt{graphLa+}\Psi$, which embeds a graph Laplacian operator in the regularization term. The novelty of this method lies in constructing the graph Laplacian based on a…

Numerical Analysis · Mathematics 2024-10-22 Davide Bianchi , Davide Evangelista , Stefano Aleotti , Marco Donatelli , Elena Loli Piccolomini , Wenbin Li

The persistent homology transform (PHT) represents a shape with a multiset of persistence diagrams parameterized by the sphere of directions in the ambient space. In this work, we describe a finite set of diagrams that discretize the PHT…

Computational Geometry · Computer Science 2026-05-26 Brittany Terese Fasy , Samuel Micka , David L. Millman , Anna Schenfisch , Lucia Williams

Topological descriptors have been increasingly utilized for capturing multiscale structural information in relational data. In this work, we consider various filtrations on the (box) product of graphs and the effect on their outputs on the…

Machine Learning · Computer Science 2026-02-09 Mattie Ji , Amauri H. Souza , Vikas Garg

Persistent homology (PH) is a powerful mathematical method to automatically extract relevant insights from images, such as those obtained by high-resolution imaging devices like electron microscopes or new-generation telescopes. However,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-15 Riccardo Ceccaroni , Lorenzo Di Rocco , Umberto Ferraro Petrillo , Pierpaolo Brutti