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The field of Neural-Symbolic (NeSy) systems is growing rapidly. Proposed approaches show great promise in achieving symbiotic unions of neural and symbolic methods. However, a unifying framework is needed to organize common NeSy modeling…

Machine Learning · Computer Science 2025-07-22 Charles Dickens , Connor Pryor , Changyu Gao , Alon Albalak , Eriq Augustine , William Wang , Stephen Wright , Lise Getoor

In this work, we study the dynamic range of a neuronal network of excitable neurons with excitatory and inhibitory synapses. We obtain an analytical expression for the critical point as a function of the excitatory and inhibitory synaptic…

Neurons and Cognition · Quantitative Biology 2020-08-24 F S Borges , P R Protachevicz , V Santos , M S Santos , E C Gabrick , K C Iarosz , E L Lameu , M S Baptista , I L Caldas , A M Batista

The pairwise maximum entropy model, also known as the Ising model, has been widely used to analyze the collective activity of neurons. However, controversy persists in the literature about seemingly inconsistent findings, whose significance…

Disordered Systems and Neural Networks · Physics 2019-03-13 Cristian Zanoci , Nima Dehghani , Max Tegmark

Many recent generative models make use of neural networks to transform the probability distribution of a simple low-dimensional noise process into the complex distribution of the data. This raises the question of whether biological networks…

Neural and Evolutionary Computing · Computer Science 2018-02-07 Hesham Mostafa , Gert Cauwenberghs

Here we numerically study a model of excitable media, namely, a network with occasionally quiet nodes and connection weights that vary with activity on a short-time scale. Even in the absence of stimuli, this exhibits unstable dynamics,…

Disordered Systems and Neural Networks · Physics 2015-05-19 S. de Franciscis , J. J. Torres , J. Marro

Energy-based models (EBMs) implement inference as gradient descent on a learned Lyapunov function, yielding interpretable, structure-preserving alternatives to black-box neural ODEs and aligning naturally with physical AI. Yet their use in…

Systems and Control · Electrical Eng. & Systems 2026-04-03 Simone Betteti , Luca Laurenti

Concurrent estimation and control of robotic systems remains an ongoing challenge, where controllers rely on data extracted from states/parameters riddled with uncertainties and noises. Framework suitability hinges on task complexity and…

Robotics · Computer Science 2023-10-09 Reza Ahmadvand , Sarah Safura Sharif , Yaser Mike Banad

The intrinsic excitation energy of fission fragments is dynamically evaluated in terms of the time dependent pairing equations. These equations are corroborated with two conditions. One of them fixes the number of particles and the another…

Nuclear Theory · Physics 2011-06-06 M. Mirea

In a living system composed of interacting components such as molecules, cells, and tissues, each component often adaptively changes its internal states in response to interactions with its surrounding components. For example, individual…

Biological Physics · Physics 2025-10-28 Ryunosuke Suzuki , Taiji Adachi

We developed a model of cortical computation that implements key features of cortical circuitry and is capable of describing propagation of neural signals between cortical locations in response to spatially distributed stimuli. The model is…

Neurons and Cognition · Quantitative Biology 2018-10-23 Sergei Gepshtein , Ambarish S. Pawar , Sergey Saveliev , Thomas D. Albright

A general theoretical framework is developed using free energy functional methods to understand the effects of heterogeneity in the folding of a well-designed protein. Native energetic heterogeneity arising from non-uniformity in native…

Disordered Systems and Neural Networks · Physics 2007-05-23 Steven S. Plotkin , Jose N. Onuchic

The Hopfield model provides a mathematically idealized yet insightful framework for understanding the mechanisms of memory storage and retrieval in the human brain. This model has inspired four decades of extensive research on learning and…

Neurons and Cognition · Quantitative Biology 2025-05-14 Simone Betteti , Giacomo Baggio , Francesco Bullo , Sandro Zampieri

Localized persistent cortical neural activity is a validated neural substrate of parametric working memory. Such activity `bumps' represent the continuous location of a cue over several seconds. Pyramidal (excitatory) and interneuronal…

Neurons and Cognition · Quantitative Biology 2022-03-07 Heather L Cihak , Tahra L Eissa , Zachary P Kilpatrick

The branching process is the minimal model for propagation dynamics, avalanches and criticality, broadly used in neuroscience. A simple extension of it, adding inhibitory nodes, induces a much-richer phenomenology, including, an…

Statistical Mechanics · Physics 2022-07-08 Roberto Corral López , Victor Buendía , Miguel A. Muñoz

Unraveling the interplay of excitation and inhibition within rhythm-generating networks remains a fundamental issue in neuroscience. We use a biophysical model to investigate the different roles of local and long-range inhibition in the…

Neurons and Cognition · Quantitative Biology 2017-06-14 Kameron Decker Harris , Tatiana Dashevskiy , Joshua Mendoza , Alfredo J. Garcia , Jan-Marino Ramirez , Eric Shea-Brown

We examine a family of random firing-rate neural networks in which we enforce the neurobiological constraint of Dale's Law --- each neuron makes either excitatory or inhibitory connections onto its post-synaptic targets. We find that this…

Neurons and Cognition · Quantitative Biology 2016-09-27 Andrea K. Barreiro , J. Nathan Kutz , Eli Shlizerman

Laboratory-grown, engineered living neuronal networks in vitro have emerged in the last years as an experimental technique to understand the collective behavior of neuronal assemblies in relation to their underlying connectivity. An…

Neurons and Cognition · Quantitative Biology 2025-01-09 Akke Mats Houben , Jordi Garcia-Ojalvo , Jordi Soriano

Although individual neurons and neural populations exhibit the phenomenon of representational drift, perceptual and behavioral outputs of many neural circuits can remain stable across time scales over which representational drift is…

In many statistical learning problems, the target functions to be optimized are highly non-convex in various model spaces and thus are difficult to analyze. In this paper, we compute \emph{Energy Landscape Maps} (ELMs) which characterize…

Machine Learning · Statistics 2014-10-03 Maria Pavlovskaia , Kewei Tu , Song-Chun Zhu

We introduce and solve a general model of dynamic response under external perturbations. This model captures a wide range of systems out of equilibrium including Ising models of physical systems, social opinions, and population genetics.…

Exactly Solvable and Integrable Systems · Physics 2007-11-19 David D. Chinellato , Marcus A. M. de Aguiar , Irving R. Epstein , Dan Braha , Yaneer Bar-Yam