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Protein function annotation is an important yet challenging task in biology. Recent deep learning advancements show significant potential for accurate function prediction by learning from protein sequences and structures. Nevertheless,…

Biomolecules · Quantitative Biology 2024-02-14 Zuobai Zhang , Jiarui Lu , Vijil Chenthamarakshan , Aurélie Lozano , Payel Das , Jian Tang

The detection of sequential patterns in data is a basic functionality of modern data processing systems for complex event processing (CEP), OLAP, and retrieval-augmented generation (RAG). In practice, pattern matching is challenging, since…

Databases · Computer Science 2025-11-07 Cong Yu , Tuo Shi , Matthias Weidlich , Bo Zhao

Numerical solvers for PDEs often struggle to balance computational cost with accuracy, especially in multiscale and time-dependent systems. Neural operators offer a promising way to accelerate simulations, but their practical deployment is…

Machine Learning · Computer Science 2025-08-12 Wei Wang , Maryam Hakimzadeh , Haihui Ruan , Somdatta Goswami

Learning based feature matching methods have been commonly studied in recent years. The core issue for learning feature matching is to how to learn (1) discriminative representations for feature points (or regions) within each intra-image…

Computer Vision and Pattern Recognition · Computer Science 2023-05-31 Bo Jiang , Shuxian Luo , Xiao Wang , Chuanfu Li , Jin Tang

Realizing delay-capacity in intermittently connected mobile networks remains a largely open question, with state-of-the-art routing schemes typically focusing either on delay or on capacity. We show the feasibility of routing with both high…

Networking and Internet Architecture · Computer Science 2014-01-24 Dhrubojyoti Roy , Mukundan Sridharan , Satyajeet Deshpande , Anish Arora

We propose a combined model, which integrates the latent factor model and the logistic regression model, for the citation network. It is noticed that neither a latent factor model nor a logistic regression model alone is sufficient to…

Machine Learning · Statistics 2019-12-03 Namjoon Suh , Xiaoming Huo , Eric Heim , Lee Seversky

Society increasingly relies on machine learning models for automated decision making. Yet, efficiency gains from automation have come paired with concern for algorithmic discrimination that can systematize inequality. Recent work has…

Computers and Society · Computer Science 2018-11-08 Alejandro Noriega-Campero , Michiel A. Bakker , Bernardo Garcia-Bulle , Alex Pentland

As language models (LMs) are used to build autonomous agents in real environments, ensuring their adversarial robustness becomes a critical challenge. Unlike chatbots, agents are compound systems with multiple components taking actions,…

Machine Learning · Computer Science 2025-02-06 Chen Henry Wu , Rishi Shah , Jing Yu Koh , Ruslan Salakhutdinov , Daniel Fried , Aditi Raghunathan

Retentive Network (RetNet) represents a significant advancement in neural network architecture, offering an efficient alternative to the Transformer. While Transformers rely on self-attention to model dependencies, they suffer from high…

Computation and Language · Computer Science 2025-06-10 Haiqi Yang , Zhiyuan Li , Yi Chang , Yuan Wu

Equipping query processing systems with provable theoretical guarantees has been a central focus at the intersection of database theory and systems in recent years. However, the divergence between theoretical abstractions and system…

Databases · Computer Science 2026-03-25 Zeyuan Hu

The cooperative Multi-A gent R einforcement Learning (MARL) with permutation invariant agents framework has achieved tremendous empirical successes in real-world applications. Unfortunately, the theoretical understanding of this MARL…

Machine Learning · Computer Science 2022-10-18 Fengzhuo Zhang , Boyi Liu , Kaixin Wang , Vincent Y. F. Tan , Zhuoran Yang , Zhaoran Wang

Hypernetworks are models that generate or modulate the weights of another network. They provide a flexible mechanism for injecting context and task conditioning and have proven broadly useful across diverse applications without significant…

Computer Vision and Pattern Recognition · Computer Science 2026-01-21 Eli Passov , Nathan S. Netanyahu , Yosi Keller

As the core technique of online recruitment platforms, person-job fit can improve hiring efficiency by accurately matching job positions with qualified candidates. However, existing studies mainly focus on the recommendation scenario, while…

Information Retrieval · Computer Science 2022-03-29 Yupeng Hou , Xingyu Pan , Wayne Xin Zhao , Shuqing Bian , Yang Song , Tao Zhang , Ji-Rong Wen

Federated learning (FL) in multi-service provider (SP) ecosystems is fundamentally hampered by non-cooperative dynamics, where privacy constraints and competing interests preclude the centralized optimization of multi-SP communication and…

Machine Learning · Computer Science 2025-08-29 Renxuan Tan , Rongpeng Li , Xiaoxue Yu , Xianfu Chen , Xing Xu , Zhifeng Zhao

In various data situations joint models are an efficient tool to analyze relationships between time dependent covariates and event times or to correct for event-dependent dropout occurring in regression analysis. Joint modeling connects a…

Methodology · Statistics 2018-10-25 Colin Griesbach , Andreas Mayr , Elisabeth Waldmann

We study a class of aggregate-join queries with multiple aggregation operators evaluated over annotated relations. We show that straightforward extensions of standard multiway join algorithms and generalized hypertree decompositions (GHDs)…

Databases · Computer Science 2015-12-11 Manas Joglekar , Rohan Puttagunta , Christopher Ré

In this work and the supporting Parts II [2] and III [3], we provide a rather detailed analysis of the stability and performance of asynchronous strategies for solving distributed optimization and adaptation problems over networks. We…

Systems and Control · Computer Science 2014-12-17 Xiaochuan Zhao , Ali H. Sayed

The vulnerability of deep neural network models to adversarial example attacks is a practical challenge in many artificial intelligence applications. A recent line of work shows that the use of randomization in adversarial training is the…

Machine Learning · Computer Science 2023-06-30 Jiahao Xie , Chao Zhang , Weijie Liu , Wensong Bai , Hui Qian

Although Recurrent Neural Network (RNN) has been a powerful tool for modeling sequential data, its performance is inadequate when processing sequences with multiple patterns. In this paper, we address this challenge by introducing a novel…

Machine Learning · Computer Science 2019-02-28 Kui Zhao , Yuechuan Li , Chi Zhang , Cheng Yang , Huan Xu

We introduce a new, "worst-case" model for an asynchronous communication network and investigate the simplest (yet central) task in this model, namely the feasibility of end-to-end routing. Motivated by the question of how successful a…

Networking and Internet Architecture · Computer Science 2009-10-26 Paul Bunn , Rafail Ostrovsky