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The subgraph isomorphism finding problem is a well-studied problem in the field of computer science and graph theory, and it aims to enumerate all instances of a query graph in the respective data graph. In this paper, we propose an…

Databases · Computer Science 2023-12-07 Zubair Ali Ansari , Muhammad Abulaish , Irfan Rashid Thoker , Jahiruddin

Quantifying the similarity between two graphs is a fundamental algorithmic problem at the heart of many data analysis tasks for graph-based data. In this paper, we study the computational complexity of a family of similarity measures based…

Discrete Mathematics · Computer Science 2022-07-04 Timo Gervens , Martin Grohe

We present novel graph kernels for graphs with node and edge labels that have ordered neighborhoods, i.e. when neighbor nodes follow an order. Graphs with ordered neighborhoods are a natural data representation for evolving graphs where…

Machine Learning · Computer Science 2018-05-30 Moez Draief , Konstantin Kutzkov , Kevin Scaman , Milan Vojnovic

We associate all small subgraph counting problems with a systematic graph encoding/representation system which makes a coherent use of graphlet structures. The system can serve as a unified foundation for studying and connecting many…

Discrete Mathematics · Computer Science 2021-03-22 Dimitris Floros , Nikos Pitsianis , Xiaobai Sun

Graph Neural Networks have achieved remarkable accuracy in semi-supervised node classification tasks. However, these results lack reliable uncertainty estimates. Conformal prediction methods provide a theoretical guarantee for node…

Machine Learning · Computer Science 2025-01-07 Jianqing Song , Jianguo Huang , Wenyu Jiang , Baoming Zhang , Shuangjie Li , Chongjun Wang

The growing popularity of dynamic applications such as social networks provides a promising way to detect valuable information in real time. Efficient analysis over high-speed data from dynamic applications is of great significance. Data…

Databases · Computer Science 2018-09-05 Youhuan Li , Lei Zou , M. Tamer Ozsu , Dongyan Zhao

We consider the problem of exact and inexact matching of weighted undirected graphs, in which a bijective correspondence is sought to minimize a quadratic weight disagreement. This computationally challenging problem is often relaxed as a…

Data Structures and Algorithms · Computer Science 2014-10-14 Yonathan Aflalo , Alex Bronstein , Ron Kimmel

We consider a variant of the densest subgraph problem in networks with single or multiple edge attributes. For example, in a social network, the edge attributes may describe the type of relationship between users, such as friends, family,…

Social and Information Networks · Computer Science 2024-02-15 Lutz Oettershagen , Honglian Wang , Aristides Gionis

Finding vertex-to-vertex correspondences in real-world graphs is a challenging task with applications in a wide variety of domains. Structural matching based on graphs connectivities has attracted considerable attention, while the…

Data Structures and Algorithms · Computer Science 2024-10-01 Raphaël Candelier

Mapper algorithm can be used to build graph-based representations of high-dimensional data capturing structurally interesting features such as loops, flares or clusters. The graph can be further annotated with additional colouring of…

Numerical Analysis · Mathematics 2020-12-04 Ciara Frances Loughrey , Nick Orr , Anna Jurek-Loughrey , Paweł Dłotko

We propose a new approach, the calibrated nonparametric scan statistic (CNSS), for more accurate detection of anomalous patterns in large-scale, real-world graphs. Scan statistics identify connected subgraphs that are interesting or…

Methodology · Statistics 2022-06-28 Chunpai Wang , Daniel B. Neill , Feng Chen

Subgraph similarity search, one of the core problems in graph search, concerns whether a target graph approximately contains a query graph. The problem is recently touched by neural methods. However, current neural methods do not consider…

Machine Learning · Computer Science 2022-10-20 Linfeng Liu , Xu Han , Dawei Zhou , Li-Ping Liu

\Graph similarity computation is an essential task in many real-world graph-related applications such as retrieving the similar drugs given a query chemical compound or finding the user's potential friends from the social network database.…

Machine Learning · Computer Science 2024-12-18 Jingjing Wang , Hongjie Zhu , Haoran Xie , Fu Lee Wang , Xiaoliang Xu , Yuxiang Wang

Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…

Discrete Mathematics · Computer Science 2013-08-02 Sudheer Vakati , David Fernández-Baca

Attributed graph clustering is challenging as it requires joint modelling of graph structures and node attributes. Recent progress on graph convolutional networks has proved that graph convolution is effective in combining structural and…

Machine Learning · Computer Science 2019-06-05 Xiaotong Zhang , Han Liu , Qimai Li , Xiao-Ming Wu

Subgraph matching is a challenging problem with a wide range of applications in database systems, biochemistry, and cognitive science. It involves determining whether a given query graph is present within a larger target graph. Traditional…

Machine Learning · Computer Science 2023-12-05 Duc Q. Nguyen , Thanh Toan Nguyen , Tho quan

Network motifs are recurrent, small-scale patterns of interactions observed frequently in a system. They shed light on the interplay between the topology and the dynamics of complex networks across various domains. In this work, we focus on…

Social and Information Networks · Computer Science 2023-11-08 Quintino Francesco Lotito , Federico Musciotto , Federico Battiston , Alberto Montresor

Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from…

Data Structures and Algorithms · Computer Science 2021-12-30 Pedro Ribeiro , Pedro Paredes , Miguel E. P. Silva , David Aparicio , Fernando Silva

We consider the following stochastic matching problem on both weighted and unweighted graphs: A graph $G(V, E)$ along with a parameter $p \in (0, 1)$ is given in the input. Each edge of $G$ is realized independently with probability $p$.…

Data Structures and Algorithms · Computer Science 2018-11-09 Soheil Behnezhad , Alireza Farhadi , MohammadTaghi Hajiaghayi , Nima Reyhani

When searching for interesting structures in graphs, it is often important to take into account not only the graph connectivity, but also the metadata available, such as node and edge labels, or temporal information. In this paper we are…

Data Structures and Algorithms · Computer Science 2020-07-09 Polina Rozenshtein , Giulia Preti , Aristides Gionis , Yannis Velegrakis