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A data-driven framework is proposed towards the end of predictive modeling of complex spatio-temporal dynamics, leveraging nested non-linear manifolds. Three levels of neural networks are used, with the goal of predicting the future state…

Computational Physics · Physics 2020-09-14 Jiayang Xu , Karthik Duraisamy

Learning interpretable latent representations from tabular data remains a challenge in deep generative modeling. We introduce SE-VAE (Structural Equation-Variational Autoencoder), a novel architecture that embeds measurement structure…

Machine Learning · Computer Science 2025-08-19 Ruiyu Zhang , Ce Zhao , Xin Zhao , Lin Nie , Wai-Fung Lam

Graphs are quickly emerging as a leading abstraction for the representation of data. One important application domain originates from an emerging discipline called "connectomics". Connectomics studies the brain as a graph; vertices…

EEG-based Brain-Computer Interfaces (BCIs) frequently face spatial specificity limitations in detecting single-trial P300 potentials, a neurophysiological hallmark leveraged for both BCI control and neurodegenerative disease diagnostics. We…

Quantitative Methods · Quantitative Biology 2025-11-05 Eva Guttmann-Flury , Jian Zhao , Mohamad Sawan

Controllable data generation aims to synthesize data by specifying values for target concepts. Achieving this reliably requires modeling the underlying generative factors and their relationships. In real-world scenarios, these factors…

Machine Learning · Computer Science 2025-11-21 Qilong Zhao , Shiyu Wang , Zeeshan Memon , Yang Qiao , Guangji Bai , Bo Pan , Zhaohui Qin , Liang Zhao

Lung cancer is responsible for 21% of cancer deaths in the UK and five-year survival rates are heavily influenced by the stage the cancer was identified at. Recent studies have demonstrated the capability of AI methods for accurate and…

Computer Vision and Pattern Recognition · Computer Science 2023-11-28 Benjamin Keel , Aaron Quyn , David Jayne , Samuel D. Relton

By composing graphical models with deep learning architectures, we learn generative models with the strengths of both frameworks. The structured variational autoencoder (SVAE) inherits structure and interpretability from graphical models,…

Machine Learning · Computer Science 2023-11-15 Harry Bendekgey , Gabriel Hope , Erik B. Sudderth

As deep Variational Auto-Encoder (VAE) frameworks become more widely used for modeling biomolecular simulation data, we emphasize the capability of the VAE architecture to concurrently maximize the timescale of the latent space while…

Chemical Physics · Physics 2021-12-08 Hannah K. Wayment-Steele , Vijay S. Pande

Normative modeling learns a healthy reference distribution and quantifies subject-specific deviations to capture heterogeneous disease effects. In Alzheimers disease (AD), multimodal neuroimaging offers complementary signals but VAE-based…

Machine Learning · Computer Science 2026-02-10 Sayantan Kumar , Peijie Qiu , Aristeidis Sotiras

Microstructure is key to controlling and understanding the properties of metallic materials, but traditional approaches to describing microstructure capture only a small number of features. To enable data-centric approaches to materials…

The key idea of variational auto-encoders (VAEs) resembles that of traditional auto-encoder models in which spatial information is supposed to be explicitly encoded in the latent space. However, the latent variables in VAEs are vectors,…

Machine Learning · Computer Science 2019-01-23 Zhengyang Wang , Hao Yuan , Shuiwang Ji

Cross-modal retrieval is to utilize one modality as a query to retrieve data from another modality, which has become a popular topic in information retrieval, machine learning, and database. How to effectively measure the similarity between…

Information Retrieval · Computer Science 2021-12-07 Jiwei Zhang , Yi Yu , Suhua Tang , Jianming Wu , Wei Li

High resolution galaxy spectra contain much information about galactic physics, but the high dimensionality of these spectra makes it difficult to fully utilize the information they contain. We apply variational autoencoders (VAEs), a…

Instrumentation and Methods for Astrophysics · Physics 2020-07-13 Stephen K. N. Portillo , John K. Parejko , Jorge R. Vergara , Andrew J. Connolly

In autonomous driving, detection of abnormal driving behaviors is essential to ensure the safety of vehicle controllers. Prior works in vehicle anomaly detection have shown that modeling interactions between agents improves detection…

Generative models of observations under interventions have been a vibrant topic of interest across machine learning and the sciences in recent years. For example, in drug discovery, there is a need to model the effects of diverse…

Machine Learning · Statistics 2024-01-17 Michael Bereket , Theofanis Karaletsos

Variational Auto-Encoder (VAE) has been widely applied as a fundamental generative model in machine learning. For complex samples like imagery objects or scenes, however, VAE suffers from the dimensional dilemma between reconstruction…

Machine Learning · Computer Science 2020-02-18 Deli Zhao , Jiapeng Zhu , Bo Zhang

This paper addresses the challenges of detecting anomalies in cellular networks in an interpretable way and proposes a new approach using variational autoencoders (VAEs) that learn interpretable representations of the latent space for each…

Machine Learning · Computer Science 2023-06-29 Amandeep Singh , Michael Weber , Markus Lange-Hegermann

Here we present DIVE: Data-driven Inference of Vertexwise Evolution. DIVE is an image-based disease progression model with single-vertex resolution, designed to reconstruct long-term patterns of brain pathology from short-term longitudinal…

Computer Vision and Pattern Recognition · Computer Science 2019-04-05 Razvan V. Marinescu , Arman Eshaghi , Marco Lorenzi , Alexandra L. Young , Neil P. Oxtoby , Sara Garbarino , Sebastian J. Crutch , Daniel C. Alexander

This paper introduces a hybrid attention and autoencoder (AE) model for unsupervised online anomaly detection in time series. The autoencoder captures local structural patterns in short embeddings, while the attention model learns long-term…

Machine Learning · Computer Science 2024-01-09 Seyed Amirhossein Najafi , Mohammad Hassan Asemani , Peyman Setoodeh

Mapping the brain imaging data to networks, where each node represents a specific area of the brain, has enabled an objective graph-theoretic analysis of human connectome. However, the latent structure on higher-order connections remains…

Neurons and Cognition · Quantitative Biology 2019-04-09 Bosiljka Tadic , Miroslav Andjelkovic , Roderick Melnik