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Understanding how stochastic gene expression is regulated in biological systems using snapshots of single-cell transcripts requires state-of-the-art methods of computational analysis and statistical inference. A Bayesian approach to…

Quantitative Methods · Quantitative Biology 2018-12-10 Yen Ting Lin , Nicolas E. Buchler

Estimation in GARMA models has traditionally been carried out under the frequentist approach. To date, Bayesian approaches for such estimation have been relatively limited. In the context of GARMA models for count time series, Bayesian…

Methodology · Statistics 2025-04-29 Katerine Zuniga Lastra , Guilherme Pumi , Taiane Schaedler Prass

Intravoxel incoherent motion (IVIM) is a diffusion-weighted magnetic resonance imaging (MRI) method that may be applied to the placenta to help diagnose abnormal pregnancies. IVIM requires prolonged scan times, followed by a model-based…

Image and Video Processing · Electrical Eng. & Systems 2025-11-04 Mbaimou Auxence Ngremmadji , Freddy Odille , Charline Bertholdt , Marine Beaumont , Olivier Morel , Bailiang Chen

A novel reconfigurable intelligent surface-aided multi-robot network is proposed, where multiple mobile robots are served by an access point (AP) through non-orthogonal multiple access (NOMA). The goal is to maximize the sum-rate of whole…

Robotics · Computer Science 2023-03-10 Xinyu Gao , Xidong Mu , Wenqiang Yi , Yuanwei Liu

We present dynesty, a public, open-source, Python package to estimate Bayesian posteriors and evidences (marginal likelihoods) using Dynamic Nested Sampling. By adaptively allocating samples based on posterior structure, Dynamic Nested…

Instrumentation and Methods for Astrophysics · Physics 2020-02-12 Joshua S Speagle

In the context of high-quality asteroseismic data provided by the NASA Kepler mission, we developed a new code, termed Diamonds (high-DImensional And multi-MOdal NesteD Sampling), for fast Bayesian parameter estimation and model comparison…

Instrumentation and Methods for Astrophysics · Physics 2015-10-21 Enrico Corsaro , Joris De Ridder

Nested sampling (NS) is a stochastic method for computing the log-evidence of a Bayesian problem. It relies on stochastic estimates of prior volumes enclosed by likelihood contours, which limits the accuracy of the log-evidence calculation.…

Computational Physics · Physics 2024-11-27 Margret Westerkamp , Jakob Roth , Philipp Frank , Will Handley , Torsten Enßlin

Model fitting is possibly the most extended problem in science. Classical approaches include the use of least-squares fitting procedures and maximum likelihood methods to estimate the value of the parameters in the model. However, in recent…

Instrumentation and Methods for Astrophysics · Physics 2022-04-12 J. Lopez-Santiago , L. Martino , J. Miguez , M. A. Vazquez

Bayesian statistical inference has become increasingly important for the analysis of observations from the Advanced LIGO and Advanced Virgo gravitational-wave detectors. To this end, iterative simulation techniques, in particular nested…

Data Analysis, Statistics and Probability · Physics 2019-04-25 Patricio Maturana Russel , Renate Meyer , John Veitch , Nelson Christensen

This paper presents a fast algorithm for estimating hidden states of Bayesian state space models. The algorithm is a variation of amortized simulation-based inference algorithms, where a large number of artificial datasets are generated at…

Econometrics · Economics 2022-10-14 Ramis Khabibullin , Sergei Seleznev

One of the important and widely used classes of models for non-Gaussian time series is the generalized autoregressive model average models (GARMA), which specifies an ARMA structure for the conditional mean process of the underlying time…

Methodology · Statistics 2021-05-13 Tingguo Zheng , Han Xiao , Rong Chen

Advances in astronomy are often driven by serendipitous discoveries. As survey astronomy continues to grow, the size and complexity of astronomical databases will increase, and the ability of astronomers to manually scour data and make such…

Instrumentation and Methods for Astrophysics · Physics 2019-01-09 Daniel Giles , Lucianne Walkowicz

This paper presents a multilevel algorithm specifically designed for radio-interferometric imaging in astronomy. The proposed algorithm is used to solve the uSARA (unconstrained Sparsity Averaging Reweighting Analysis) formulation of this…

Optimization and Control · Mathematics 2024-03-21 Guillaume Lauga , Audrey Repetti , Elisa Riccietti , Nelly Pustelnik , Paulo Gonçalves , Yves Wiaux

The recently introduced nested sampling algorithm allows the direct and efficient calculation of the partition function of atomistic systems. We demonstrate its applicability to condensed phase systems with periodic boundary conditions by…

Statistical Mechanics · Physics 2014-01-09 Lívia B. Pártay , Albert P. Bartók , Gábor Csányi

AutoRegressive (AR) models have demonstrated competitive performance in image generation, achieving results comparable to those of diffusion models. However, their token-by-token image generation mechanism remains computationally intensive…

Computer Vision and Pattern Recognition · Computer Science 2025-10-28 Hongyu Wu , Xuhui Fan , Zhangkai Wu , Longbing Cao

In the light of regularized dynamic time warping kernels, this paper re-considers the concept of time elastic centroid for a setof time series. We derive a new algorithm based on a probabilistic interpretation of kernel alignment matrices.…

Machine Learning · Computer Science 2019-07-12 Pierre-François Marteau

We describe a method to explore the configurational phase space of chemical systems. It is based on the nested sampling algorithm recently proposed by Skilling [Skilling J. (2004) In AIP Conference Proceedings, vol. 735, p. 395.; Skilling…

Statistical Mechanics · Physics 2010-07-08 Livia B. Pártay , Albert P. Bartók , Gábor Csányi

Space-based projects are providing a wealth of high-quality asteroseismic data, including frequencies for a large number of stars showing solar-like oscillations. These data open the prospect for precise determinations of key stellar…

Solar and Stellar Astrophysics · Physics 2015-05-20 P. -O. Quirion , J. Christensen-Dalsgaard , T. Arentoft

The main idea of nested sampling is to substitute the high-dimensional likelihood integral over the parameter space $\Omega$ by an integral over the unit line $[0,1]$ by employing a push-forward with respect to a suitable transformation.…

Statistics Theory · Mathematics 2021-04-29 Doris Schittenhelm , Philipp Wacker

Irregularly sampled time series data arise naturally in many application domains including biology, ecology, climate science, astronomy, and health. Such data represent fundamental challenges to many classical models from machine learning…

Machine Learning · Computer Science 2021-01-07 Satya Narayan Shukla , Benjamin M. Marlin
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