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The pre-train then fine-tune approach has advanced GNNs by enabling general knowledge capture without task-specific labels. However, an objective gap between pre-training and downstream tasks limits its effectiveness. Recent graph prompting…

Machine Learning · Computer Science 2025-01-28 Qin Chen , Liang Wang , Bo Zheng , Guojie Song

This paper addresses the challenging problem of retrieval and matching of graph structured objects, and makes two key contributions. First, we demonstrate how Graph Neural Networks (GNN), which have emerged as an effective model for various…

Machine Learning · Computer Science 2019-05-14 Yujia Li , Chenjie Gu , Thomas Dullien , Oriol Vinyals , Pushmeet Kohli

Graph Transformer is a new architecture that surpasses GNNs in graph learning. While there emerge inspiring algorithm advancements, their practical adoption is still limited, particularly on real-world graphs involving up to millions of…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-22 Meng Zhang , Jie Sun , Qinghao Hu , Peng Sun , Zeke Wang , Yonggang Wen , Tianwei Zhang

Graph Neural Networks have emerged as an effective machine learning tool for multi-disciplinary tasks such as pharmaceutical molecule classification and chemical reaction prediction, because they can model non-euclidean relationships…

Machine Learning · Computer Science 2023-07-27 Tongya Zheng , Tianli Zhang , Qingzheng Guan , Wenjie Huang , Zunlei Feng , Mingli Song , Chun Chen

Graph neural networks (GNNs) have recently exploded in popularity thanks to their broad applicability to ubiquitous graph-related problems such as quantum chemistry, drug discovery, and high energy physics. However, meeting demand for novel…

Machine Learning · Computer Science 2022-01-24 Stefan Abi-Karam , Yuqi He , Rishov Sarkar , Lakshmi Sathidevi , Zihang Qiao , Cong Hao

As the size of real-world graphs increases, training Graph Neural Networks (GNNs) has become time-consuming and requires acceleration. While previous works have demonstrated the potential of utilizing FPGA for accelerating GNN training, few…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-06 Yi-Chien Lin , Bingyi Zhang , Viktor Prasanna

Core computations in Graph Neural Network (GNN) training and inference are often mapped to sparse matrix operations such as sparse-dense matrix multiplication (SpMM). These sparse operations are harder to optimize by manual tuning because…

Machine Learning · Computer Science 2024-03-25 Md Saidul Hoque Anik , Pranav Badhe , Rohit Gampa , Ariful Azad

Caching and prefetching techniques are fundamental to modern computing, serving to bridge the growing performance gap between processors and memory. Traditional prefetching strategies are often limited by their reliance on predefined…

Performance · Computer Science 2025-10-28 F. I. Qowy

Graph neural networks (GNNs) are powerful tools for exploring and learning from graph structures and features. As such, achieving high-performance execution for GNNs becomes crucially important. Prior works have proposed to explore the…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-30 Yangjie Zhou , Yaoxu Song , Jingwen Leng , Zihan Liu , Weihao Cui , Zhendong Zhang , Cong Guo , Quan Chen , Li Li , Minyi Guo

Graph Neural Networks (GNNs) have achieved state-of-the-art results on many graph analysis tasks such as node classification and link prediction. However, important unsupervised problems on graphs, such as graph clustering, have proved more…

Machine Learning · Computer Science 2023-06-02 Anton Tsitsulin , John Palowitch , Bryan Perozzi , Emmanuel Müller

Graph Neural Networks (GNNs) are proficient in graph representation learning and achieve promising performance on versatile tasks such as node classification and link prediction. Usually, a comprehensive hyperparameter tuning is essential…

Machine Learning · Computer Science 2024-10-10 Lequan Lin , Dai Shi , Andi Han , Zhiyong Wang , Junbin Gao

Efficiency is essential to support responsiveness w.r.t. ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code that supports symbolic, graph-based Deep…

Software Engineering · Computer Science 2022-07-20 Tatiana Castro Vélez , Raffi Khatchadourian , Mehdi Bagherzadeh , Anita Raja

The recent introduction of Graph Neural Networks (GNNs) and their growing popularity in the past few years has enabled the application of deep learning algorithms to non-Euclidean, graph-structured data. GNNs have achieved state-of-the-art…

Machine Learning · Computer Science 2020-10-27 Tuomas P. Oikarinen , Daniel C. Hannah , Sohrob Kazerounian

Graph Neural Networks (GNNs) have achieved great success in various graph mining tasks.However, drastic performance degradation is always observed when a GNN is stacked with many layers. As a result, most GNNs only have shallow…

Machine Learning · Computer Science 2022-06-10 Wentao Zhang , Zeang Sheng , Ziqi Yin , Yuezihan Jiang , Yikuan Xia , Jun Gao , Zhi Yang , Bin Cui

Recent deep learning models have moved beyond low-dimensional regular grids such as image, video, and speech, to high-dimensional graph-structured data, such as social networks, brain connections, and knowledge graphs. This evolution has…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-22 Lingxiao Ma , Zhi Yang , Youshan Miao , Jilong Xue , Ming Wu , Lidong Zhou , Yafei Dai

Graph Neural Networks (GNNs) have emerged as powerful tools for supervised machine learning over graph-structured data, while sampling-based node representation learning is widely utilized in unsupervised learning. However, scalability…

Machine Learning · Computer Science 2024-07-23 Vipul Gupta , Xin Chen , Ruoyun Huang , Fanlong Meng , Jianjun Chen , Yujun Yan

Graph Neural Networks (GNNs) use a fully-connected layer to extract features from the nodes of a graph and aggregate these features using message passing between nodes, combining two distinct computational patterns: dense, regular…

Hardware Architecture · Computer Science 2021-03-22 Jacob R. Stevens , Dipankar Das , Sasikanth Avancha , Bharat Kaul , Anand Raghunathan

Graph neural networks (GNNs) are emerging for machine learning research on graph-structured data. GNNs achieve state-of-the-art performance on many tasks, but they face scalability challenges when it comes to real-world applications that…

Machine Learning · Computer Science 2026-04-02 Shichang Zhang , Atefeh Sohrabizadeh , Cheng Wan , Zijie Huang , Ziniu Hu , Yewen Wang , Yingyan , Lin , Jason Cong , Yizhou Sun

Training Graph Neural Networks(GNNs) on a large monolithic graph presents unique challenges as the graph cannot fit within a single machine and it cannot be decomposed into smaller disconnected components. Distributed sampling-based…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-30 Hesham Mostafa , Adam Grabowski , Md Asadullah Turja , Juan Cervino , Alejandro Ribeiro , Nageen Himayat

The advent of Graph Neural Networks (GNNs) has revolutionized the field of machine learning, offering a novel paradigm for learning on graph-structured data. Unlike traditional neural networks, GNNs are capable of capturing complex…

Hardware Architecture · Computer Science 2024-06-26 Kaustubh Shivdikar