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Modern scientific applications are increasingly decomposable into individual functions that may be deployed across distributed and diverse cyberinfrastructure such as supercomputers, clouds, and accelerators. Such applications call for new…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-09-11 Yifei Li , Ryan Chard , Yadu Babuji , Kyle Chard , Ian Foster , Zhuozhao Li

The management of third-party package dependencies is crucial to most technology stacks, with package managers acting as brokers to ensure that a verified package is correctly installed, configured, or removed from an application. Diversity…

Software Engineering · Computer Science 2021-08-16 Syful Islam , Raula Gaikovina Kula , Christoph Treude , Bodin Chinthanet , Takashi Ishio , Kenichi Matsumoto

Enterprises are confronted with an unprecedented escalation in cybersecurity vulnerabilities, with thousands of new CVEs disclosed each month. Conventional prioritization frameworks such as CVSS offer static severity metrics that fail to…

Software Engineering · Computer Science 2026-05-26 Yelena Mujibur Sheikh , Awez Akhtar Khatik , Luoxi Tang , Yuqiao Meng , Zhaohan Xi

Open Source Software (OSS) forms much of the fabric of our digital society, especially successful and sustainable ones. But many OSS projects do not become sustainable, resulting in abandonment and even risks for the world's digital…

Software Engineering · Computer Science 2022-03-08 Likang Yin , Mahasweta Chakraborty , Charles Schweik , Seth Frey , Vladimir Filkov

In this paper, we take a deep dive into microarchitectural security from a hardware designer's perspective by reviewing the existing approaches to detect hardware vulnerabilities during the design phase. We show that a protection gap…

Layered software architecture contains several intra-layer and inter-layer dependencies. Each layer depends on shared components making it difficult to release a code change, bug fix or feature without exhaustive testing and having to build…

Software Engineering · Computer Science 2016-06-28 Amol Patwardhan , Rahul Patwardhan , Sumalini Vartak

Supply chain attacks have emerged as a prominent cybersecurity threat in recent years. Reproducible and bootstrappable builds have the potential to reduce such attacks significantly. In combination with independent, exhaustive and periodic…

Cryptography and Security · Computer Science 2025-05-29 Joshua Drexel , Esther Hänggi , Iyán Méndez Veiga

Software repository mining is the foundation for many empirical software engineering studies. The collection and analysis of detailed data can be challenging, especially if data shall be shared to enable replicable research and open science…

Software Engineering · Computer Science 2020-01-07 Alexander Trautsch , Fabian Trautsch , Steffen Herbold , Benjamin Ledel , Jens Grabowski

During the usage phase, a technical product system is in permanent interaction with its environment. This interaction can lead to failures that significantly endanger the safety of the user and negatively affect the quality and reliability…

Software Engineering · Computer Science 2023-06-29 Tim Maurice Julitz , Nadine Schlüter , Manuel Löwer

Protecting software supply chains from malicious packages is paramount in the evolving landscape of software development. Attacks on the software supply chain involve attackers injecting harmful software into commonly used packages or…

Cryptography and Security · Computer Science 2024-02-13 S. Halder , M. Bewong , A. Mahboubi , Y. Jiang , R. Islam , Z. Islam , R. Ip , E. Ahmed , G. Ramachandran , A. Babar

In this research, we present a comprehensive, longitudinal empirical summary of the R package ecosystem, including not just CRAN, but also Bioconductor and GitHub. We analyze more than 25,000 packages, 150,000 releases, and 15 million files…

Mathematical Software · Computer Science 2021-02-22 Ethan Bommarito , Michael J Bommarito

Software supply chain frameworks, such as the US NIST Secure Software Development Framework (SSDF), detail what tasks software development organizations are recommended or mandated to adopt to reduce security risk. However, to further…

Software Engineering · Computer Science 2025-07-24 Sivana Hamer , Jacob Bowen , Md Nazmul Haque , Robert Hines , Chris Madden , Laurie Williams

In 2023, Sonatype reported a 200\% increase in software supply chain attacks, including major build infrastructure attacks. To secure the software supply chain, practitioners can follow security framework guidance like the Supply-chain…

Computational Engineering, Finance, and Science · Computer Science 2024-12-06 Mahzabin Tamanna , Sivana Hamer , Mindy Tran , Sascha Fahl , Yasemin Acar , Laurie Williams

Agent Skills package SKILL.md files, scripts, reference documents, and repository context into reusable capability units, turning pre-load auditing from single-prompt filtering into cross-file security review. Existing guardrails often flag…

Cryptography and Security · Computer Science 2026-04-29 Lijia Lv , Xuehai Tang , Jie Wen , Jizhong Han , Songlin Hu

In the open source software (OSS) ecosystem, there exists a complex software supply chain, where developers upstream and downstream widely borrow and reuse code. This results in the widespread occurrence of recurring defects, missing fixes,…

Cryptography and Security · Computer Science 2024-01-31 Fuwei Wang , Yongzhi Liu , Zhiqiang Dong

This paper systematizes knowledge about secure software supply chain patterns. It identifies four stages of a software supply chain attack and proposes three security properties crucial for a secured supply chain: transparency, validity,…

Cryptography and Security · Computer Science 2024-06-17 Chinenye Okafor , Taylor R. Schorlemmer , Santiago Torres-Arias , James C. Davis

Much of the success of modern software development can be attributed to code reuse. The ability to reuse existing functionality via third-party dependencies has enabled massive gains in productivity, but for a long time the dominant…

Software Engineering · Computer Science 2025-10-07 Brittany Anne Reid , Raula Gaikovina Kula

Context: Mining software repositories is a popular means to gain insights into a software project's evolution, monitor project health, support decisions and derive best practices. Tools supporting the mining process are commonly applied by…

Software Engineering · Computer Science 2025-11-13 Nicole Hoess , Carlos Paradis , Rick Kazman , Wolfgang Mauerer

Empirical studies of research software are hard to compare because the literature operationalizes ``research software'' inconsistently. Motivated by the research software supply chain (RSSC) and its security risks, we introduce an…

Software Engineering · Computer Science 2026-04-15 Kelechi G. Kalu , Soham Rattan , Taylor R. Schorlemmer , George K. Thiruvathukal , Jeffrey C. Carver , James C. Davis

The prevalent usage of open-source software (OSS) has led to an increased interest in resolving potential third-party security risks by fixing common vulnerabilities and exposures (CVEs). However, even with automated code analysis tools in…

Software Engineering · Computer Science 2022-11-16 Frederik L. Dennig , Eren Cakmak , Henrik Plate , Daniel A. Keim