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Software is an important tool for scholarly work, but software produced for research is in many cases not easily identifiable or discoverable. A potential first step in linking research and software is software identification. In this paper…

Digital Libraries · Computer Science 2023-03-01 Eva Maxfield Brown , Lindsey Schwartz , Richard Lewei Huang , Nicholas Weber

The proliferation of open-source scientific software for science and research presents opportunities and challenges. In this paper, we introduce the SciCat dataset -- a comprehensive collection of Free-Libre Open Source Software (FLOSS)…

Software Engineering · Computer Science 2023-12-12 Addi Malviya-Thakur , Reed Milewicz , Lavinia Paganini , Ahmed Samir Imam Mahmoud , Audris Mockus

The reuse of research software is central to research efficiency and academic exchange. The application of software enables researchers with varied backgrounds to reproduce, validate, and expand upon study findings. Furthermore, the…

With the advent of open source software, a veritable treasure trove of previously proprietary software development data was made available. This opened the field of empirical software engineering research to anyone in academia. Data that is…

Software Engineering · Computer Science 2022-04-19 Adam Tutko , Austin Z. Henley , Audris Mockus

Software plays a central role in scientific discovery. Improving how we develop and use software for research can have both broad and deep impacts on a spectrum of challenges and opportunities society faces today. The emergence of Research…

Software Engineering · Computer Science 2022-11-17 Michael A. Heroux

Software is now a vital scientific instrument, providing the tools for data collection and analysis across disciplines from bioinformatics and computational physics, to the humanities. The software used in research is often home-grown and…

Software Engineering · Computer Science 2019-03-15 Mario Rosado de Souza , Robert Haines , Markel Vigo , Caroline Jay

Modern science is relying on software more than ever. The behavior and outcomes of this software shape the scientific and public discourse on important topics like climate change, economic growth, or the spread of infections. Most…

Software Engineering · Computer Science 2025-01-09 Adrian Bajraktari , Michelle Binder , Andreas Vogelsang

Open source software development, particularly within institutions such as universities and research laboratories, is often decentralized and difficult to track. Although academic teams produce many impactful scientific tools, their…

Software Engineering · Computer Science 2026-02-27 Juanita Gomez , Emily Lovell , Stephanie Lieggi , Alvaro A. Cardenas , James Davis

Background: Research software is crucial for enabling research discoveries and supporting data analysis, simulation, and interpretation across domains. However, evolving requirements, complex inputs, and legacy dependencies hinder the…

Software Engineering · Computer Science 2025-12-16 Md Ariful Islam Malik , Jeffrey C. Carver , Nasir U. Eisty

Open source software has an increasing importance in our modern society, providing basic services to other software systems and also supporting the rapid development of a variety of end-user applications. Recently, world-wide code sharing…

Software Engineering · Computer Science 2018-05-04 Thais Mombach , Marco Tulio Valente , Cuiting Chen , Magiel Bruntink , Gustavo Pinto

In computational science and in computer science, research software is a central asset for research. Computational science is the application of computer science and software engineering principles to solving scientific problems, whereas…

Software Engineering · Computer Science 2019-08-19 Wilhelm Hasselbring , Leslie Carr , Simon Hettrick , Heather Packer , Thanassis Tiropanis

The security of research software is essential for ensuring the integrity and reproducibility of scientific results. However, research software security is still largely unexplored. Due to its dependence on open source components and…

Software Engineering · Computer Science 2025-08-07 Richard Hegewald , Rebecca Beyer

Open science describes the movement of making any research artefact available to the public and includes, but is not limited to, open access, open data, and open source. While open science is becoming generally accepted as a norm in other…

Software Engineering · Computer Science 2021-02-10 Daniel Méndez Fernández , Daniel Graziotin , Stefan Wagner , Heidi Seibold

Research software (also called scientific software) is essential for advancing scientific endeavours. Research software encapsulates complex algorithms and domain-specific knowledge and is a fundamental component of all science. A pervasive…

Software Engineering · Computer Science 2026-03-24 Neil A. Ernst , Ahmed Musa Awon , Swapnil Hingmire , Ze Shi Li

In open-source software development environments; textual, numerical and relationship-based data generated are of interest to researchers. Various data sets are available for this data, which is frequently used in areas such as software…

Software Engineering · Computer Science 2020-10-01 Abdulkadir Şeker , Banu Diri , Halil Arslan

Research software is a class of software developed to support research. Today a wealth of such software is created daily in universities, government, and commercial research enterprises worldwide. The sustainability of this software faces…

Software Engineering · Computer Science 2021-05-18 Jeffrey C. Carver , Ian A. Cosden , Chris Hill , Sandra Gesing , Daniel S. Katz

Modern research in the sciences, engineering, humanities, and other fields depends on software, and specifically, research software. Much of this research software is developed in universities, by faculty, postdocs, students, and staff. In…

Software Engineering · Computer Science 2019-06-04 Daniel S. Katz , Kenton McHenry , Caleb Reinking , Robert Haines

In most fields, computational models and data analysis have become a significant part of how research is performed, in addition to the more traditional theory and experiment. Mathematics is no exception to this trend. While the system of…

Computers and Society · Computer Science 2018-07-24 Daniel S. Katz , Neil P. Chue Hong

Background: Research software plays an important role in solving real-life problems, empowering scientific innovations, and handling emergency situations. Therefore, the correctness and trustworthiness of research software are of absolute…

Software Engineering · Computer Science 2022-07-27 Nasir U. Eisty , Jeffrey C. Carver

Research software is crucial in the research process and the growth of Open Science underscores the importance of accessing research artifacts, like data and code, raising traceability challenges among outputs. While it is a clear principle…

Software Engineering · Computer Science 2025-07-31 Domhnall Carlin , Austen Rainer
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