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Eisen is an open source python package making the implementation of deep learning methods easy. It is specifically tailored to medical image analysis and computer vision tasks, but its flexibility allows extension to any application. Eisen…

Computer Vision and Pattern Recognition · Computer Science 2020-04-07 Frank Mancolo

Research in ultrasound imaging is limited in reproducibility by two factors: First, many existing ultrasound pipelines are protected by intellectual property, rendering exchange of code difficult. Second, most pipelines are implemented in…

Computer Vision and Pattern Recognition · Computer Science 2018-05-11 Rüdiger Göbl , Nassir Navab , Christoph Hennersperger

Deep learning has shown great promise in physiological signal analysis, yet its progress is hindered by heterogeneous data formats, inconsistent preprocessing strategies, fragmented model pipelines, and non-reproducible experimental setups.…

Artificial Intelligence · Computer Science 2025-12-30 Tao Zhou , Lingyu Shu , Zixing Zhang , Jing Han

Ultrasound imaging provides information from a large part of the muscle. It has recently been shown that ultrafast ultrasound imaging can be used to record and analyze the mechanical response of individual MUs using blind source separation.…

Computer Vision and Pattern Recognition · Computer Science 2020-10-08 Hazrat Ali , Johannes Umander , Robin Rohlén , Christer Grönlund

MELAGE, a pioneering Python-based neuroimaging software, emerges as a versatile tool for the visualization, processing, and analysis of medical images. Initially conceived to address the unique challenges of processing 3D ultrasound and MRI…

Image and Video Processing · Electrical Eng. & Systems 2023-09-15 Bahram Jafrasteh , Simón Pedro Lubián López , Isabel Benavente Fernández

Medical image analysis using deep learning frameworks has advanced healthcare by automating complex tasks, but many existing frameworks lack flexibility, modularity, and user-friendliness. To address these challenges, we introduce Yucca, an…

Computer Vision and Pattern Recognition · Computer Science 2024-07-30 Sebastian Nørgaard Llambias , Julia Machnio , Asbjørn Munk , Jakob Ambsdorf , Mads Nielsen , Mostafa Mehdipour Ghazi

In this paper, we introduce SciANN, a Python package for scientific computing and physics-informed deep learning using artificial neural networks. SciANN uses the widely used deep-learning packages Tensorflow and Keras to build deep neural…

Other Computer Science · Computer Science 2020-12-30 Ehsan Haghighat , Ruben Juanes

Image classification is widely used to build predictive models for breast cancer diagnosis. Most existing approaches overwhelmingly rely on deep convolutional networks to build such diagnosis pipelines. These model architectures, although…

Image and Video Processing · Electrical Eng. & Systems 2022-01-20 Alireza Rezazadeh , Yasamin Jafarian , Ali Kord

Ultrasound is well-established as an imaging modality for diagnostic and interventional purposes. However, the image quality varies with operator skills as acquiring and interpreting ultrasound images requires extensive training due to the…

We present pyroomacoustics, a software package aimed at the rapid development and testing of audio array processing algorithms. The content of the package can be divided into three main components: an intuitive Python object-oriented…

Sound · Computer Science 2019-05-08 Robin Scheibler , Eric Bezzam , Ivan Dokmanić

Photoacoustic (PA) imaging systems based on clinical linear ultrasound arrays have become increasingly popular in translational PA research. Such systems can be more easily integrated in a clinical workflow due to the simultaneous access to…

We present the Core Imaging Library (CIL), an open-source Python framework for tomographic imaging with particular emphasis on reconstruction of challenging datasets. Conventional filtered back-projection reconstruction tends to be…

Background and Objective: Deep learning enables tremendous progress in medical image analysis. One driving force of this progress are open-source frameworks like TensorFlow and PyTorch. However, these frameworks rarely address issues…

Image and Video Processing · Electrical Eng. & Systems 2021-04-29 Alain Jungo , Olivier Scheidegger , Mauricio Reyes , Fabian Balsiger

In this paper we introduce the Perception for Autonomous Systems (PAZ) software library. PAZ is a hierarchical perception library that allow users to manipulate multiple levels of abstraction in accordance to their requirements or skill…

Computer Vision and Pattern Recognition · Computer Science 2020-10-29 Octavio Arriaga , Matias Valdenegro-Toro , Mohandass Muthuraja , Sushma Devaramani , Frank Kirchner

The open-source PyNX toolkit [Favre-Nicolin et al (2011) arXiv:1010.2641, Mandula et al (2016)] has been extended to provide tools for coherent X-ray imaging data analysis and simulation. All calculations can be executed on graphical…

Medical imaging has significantly revolutionized medical diagnostics and treatment planning, progressing from early X-ray usage to sophisticated methods like MRIs, CT scans, and ultrasounds. This paper investigates the use of deep learning…

Computer Vision and Pattern Recognition · Computer Science 2024-11-22 Abdennour Boulesnane , Boutheina Mokhtari , Oumnia Rana Segueni , Slimane Segueni

This paper introduces CAAI, a novel cognitive architecture for artificial intelligence in cyber-physical production systems. The goal of the architecture is to reduce the implementation effort for the usage of artificial intelligence…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-15 Andreas Fischbach , Jan Strohschein , Andreas Bunte , Jörg Stork , Heide Faeskorn-Woyke , Natalia Moriz , Thomas Bartz-Beielstein

Background and Objective: Computational ultrasound imaging has become a well-established methodology in the ultrasound community. Simulations of ultrasound sequences and images allow the study of innovative techniques in terms of emission…

Medical Physics · Physics 2022-03-08 Damien Garcia

Automated searches for strong gravitational lensing in optical imaging survey datasets often employ machine learning and deep learning approaches. These techniques require more example systems to train the algorithms than have presently…

Instrumentation and Methods for Astrophysics · Physics 2021-02-08 Robert Morgan , Brian Nord , Simon Birrer , Joshua Yao-Yu Lin , Jason Poh

Ultrasound imaging is pivotal in various medical diagnoses due to its non-invasive nature and safety. In clinical practice, the accuracy and precision of ultrasound image analysis are critical. Recent advancements in deep learning are…

Image and Video Processing · Electrical Eng. & Systems 2024-08-26 Yuhan Song , Nak Young Chong
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