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Persistent homology allows us to create topological summaries of complex data. In order to analyse these statistically, we need to choose a topological summary and a relevant metric space in which this topological summary exists. While…

Algebraic Topology · Mathematics 2019-06-24 Katharine Turner , Gard Spreemann

Proposing scoring functions to effectively understand, analyze and learn various properties of high dimensional hidden representations of large-scale transformer models like BERT can be a challenging task. In this work, we explore a new…

Machine Learning · Computer Science 2022-11-01 Jatin Chauhan , Manohar Kaul

While standard persistent homology has been successful in extracting information from metric datasets, its applicability to more general data, e.g. directed networks, is hindered by its natural insensitivity to asymmetry. We study a…

Algebraic Topology · Mathematics 2017-04-17 Samir Chowdhury , Facundo Mémoli

The Hough transform is a popular and classical technique in computer vision for the detection of lines (or more general objects). It maps a pixel into a dual space -- the Hough space: each pixel is mapped to the set of lines through this…

Computer Vision and Pattern Recognition · Computer Science 2025-05-23 Johannes Ferner , Stefan Huber , Saverio Messineo , Angel Pop , Martin Uray

In this paper we develop a novel Topological Data Analysis (TDA) approach for studying graph representations of time series of dynamical systems. Specifically, we show how persistent homology, a tool from TDA, can be used to yield a…

Chaotic Dynamics · Physics 2020-01-28 Audun Myers , Elizabeth Munch , Firas A. Khasawneh

Topological Data Analysis (TDA) is a rising field of computational topology in which the topological structure of a data set can be observed by persistent homology. By considering a sequence of sublevel sets, one obtains a filtration that…

Methodology · Statistics 2020-03-17 Yu-Min Chung , William Cruse , Austin Lawson

Persistent homology is a method from computational algebraic topology that can be used to study the "shape" of data. We illustrate two filtrations --- the weight rank clique filtration and the Vietoris--Rips (VR) filtration --- that are…

Computational Geometry · Computer Science 2016-10-30 Bernadette J. Stolz , Heather A. Harrington , Mason A. Porter

The problem of finding \emph{distance} between \emph{pattern} of length $m$ and \emph{text} of length $n$ is a typical way of generalizing pattern matching to incorporate dissimilarity score. For both Hamming and $L_1$ distances only a…

Data Structures and Algorithms · Computer Science 2018-05-04 Przemysław Uznański

In many scientific and technological contexts we have only a poor understanding of the structure and details of appropriate mathematical models. We often, therefore, need to compare different models. With available data we can use formal…

Algebraic Topology · Mathematics 2021-11-04 Sean T. Vittadello , Michael P. H. Stumpf

Topological data analysis (TDA) is an area of data science that focuses on using invariants from algebraic topology to provide multiscale shape descriptors for geometric data sets such as point clouds. One of the most important such…

Computational Geometry · Computer Science 2023-06-21 David Loiseaux , Mathieu Carrière , Andrew J. Blumberg

Controlling structural complexity, particularly the number of holes, remains a fundamental challenge in topology optimization, with significant implications for both theoretical analysis and manufacturability. Most existing approaches rely…

Optimization and Control · Mathematics 2026-02-17 Gengchen Li , Depeng Gao , Wenliang Yin , Hongwei Lin

Due to its highly oscillating solution, the Helmholtz equation is numerically challenging to solve. To obtain a reasonable solution, a mesh size that is much smaller than the reciprocal of the wavenumber is typically required (known as the…

Numerical Analysis · Mathematics 2023-02-21 Qiwei Feng , Bin Han , Michelle Michelle

The extension of persistent homology to multi-parameter setups is an algorithmic challenge. Since most computation tasks scale badly with the size of the input complex, an important pre-processing step consists of simplifying the input…

Algebraic Topology · Mathematics 2019-03-19 Ulderico Fugacci , Michael Kerber

Stratified digraphs are popular models for feedforward neural networks. However, computation of their path homologies has been limited to low dimensions due to high computational complexity. A recursive algorithm is proposed to compute…

Computational Geometry · Computer Science 2024-12-12 Zhengtong Zhu , Zhiyi Chi

One-dimensional persistent homology is arguably the most important and heavily used computational tool in topological data analysis. Additional information can be extracted from datasets by studying multi-dimensional persistence modules and…

Algebraic Topology · Mathematics 2023-08-31 Facundo Mémoli , Anastasios Stefanou , Ling Zhou

Persistent homology is a relatively new tool often used for \emph{qualitative} analysis of intrinsic topological features in images and data originated from scientific and engineering applications. In this paper, we report novel…

Biomolecules · Quantitative Biology 2014-12-09 Kelin Xia , Xin Feng , Yiying Tong , Guo Wei We

Cohomological ideas have recently been injected into persistent homology and have for example been used for accelerating the calculation of persistence diagrams by the software Ripser. The cup product operation which is available at…

Algebraic Topology · Mathematics 2022-12-20 Marco Contessoto , Facundo Mémoli , Anastasios Stefanou , Ling Zhou

Persistence diagrams (PDs) are now routinely used to summarize the underlying topology of complex data. Despite several appealing properties, incorporating PDs in learning pipelines can be challenging because their natural geometry is not…

Machine Learning · Statistics 2018-11-14 Théo Lacombe , Marco Cuturi , Steve Oudot

By general case we mean methods able to process simplicial sets and chain complexes not of finite type. A filtration of the object to be studied is the heart of both subjects persistent homology and spectral sequences. In this paper we…

Computational Geometry · Computer Science 2014-04-01 Ana Romero , Jónathan Heras , Julio Rubio , Francis Sergeraert

Given finite metric spaces $(X, d_X)$ and $(Y, d_Y)$, we investigate the persistent homology $PH_*(X \times Y)$ of the Cartesian product $X \times Y$ equipped with the sum metric $d_X + d_Y$. Interpreting persistent homology as a module…

Algebraic Topology · Mathematics 2019-10-22 Gunnar Carlsson , Benjamin Filippenko