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Related papers: Hierarchical Molecular Language Models (HMLMs)

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The significant advancements in visual understanding and instruction following from Multimodal Large Language Models (MLLMs) have opened up more possibilities for broader applications in diverse and universal human-centric scenarios.…

Computer Vision and Pattern Recognition · Computer Science 2024-10-10 Keliang Li , Zaifei Yang , Jiahe Zhao , Hongze Shen , Ruibing Hou , Hong Chang , Shiguang Shan , Xilin Chen

Understanding how chemical perturbations propagate through biological systems is essential for robust molecular property prediction. While most existing methods focus on chemical structures alone, recent advances highlight the crucial role…

Machine Learning · Computer Science 2025-11-27 Mengran Li , Zelin Zang , Wenbin Xing , Junzhou Chen , Ronghui Zhang , Jiebo Luo , Stan Z. Li

The emergence of Large Language Models (LLMs) has reshaped agent systems. Unlike traditional rule-based agents with limited task scope, LLM-powered agents offer greater flexibility, cross-domain reasoning, and natural language interaction.…

Artificial Intelligence · Computer Science 2026-05-05 Guannan Liang , Qianqian Tong

We address the task of hierarchical multi-label classification (HMC) of scientific documents at an industrial scale, where hundreds of thousands of documents must be classified across thousands of dynamic labels. The rapid growth of…

Artificial Intelligence · Computer Science 2024-12-09 Seyed Amin Tabatabaei , Sarah Fancher , Michael Parsons , Arian Askari

Heterogeneous graph neural networks (HGNNs) excel at capturing structural and semantic information in heterogeneous graphs (HGs), while struggling to generalize across domains and tasks. With the rapid advancement of large language models…

Social and Information Networks · Computer Science 2025-07-31 Jinyu Yang , Cheng Yang , Shanyuan Cui , Zeyuan Guo , Liangwei Yang , Muhan Zhang , Zhiqiang Zhang , Chuan Shi

The advent of Large Language Models (LLMs) has provided unprecedented capabilities for analyzing unstructured text data. However, deploying these models as reliable, robust, and scalable classifiers in production environments presents…

Computation and Language · Computer Science 2025-08-25 Doohee You , Andy Parisi , Zach Vander Velden , Lara Dantas Inojosa

Large language models (LLMs) have emerged as transformative tools in medicine, with strong capabilities in language understanding, reasoning, and structured information extraction. Radiation oncology is particularly well suited for LLM…

Large Language Model (LLM)-based agents have demonstrated strong capabilities across a wide range of tasks, and their application in the medical domain holds particular promise due to the demand for high generalizability and reliance on…

Artificial Intelligence · Computer Science 2025-08-18 Yangyang Zhuang , Wenjia Jiang , Jiayu Zhang , Ze Yang , Joey Tianyi Zhou , Chi Zhang

Although long-term memory systems have made substantial progress in recent years, they still exhibit clear limitations in adaptability, scalability, and self-evolution under continuous interaction settings. Inspired by cognitive theories,…

Artificial Intelligence · Computer Science 2026-01-13 Ningning Zhang , Xingxing Yang , Zhizhong Tan , Weiping Deng , Wenyong Wang

Abstract Meaning Representation (AMR) parsing aims to translate sentences to semantic representation with a hierarchical structure, and is recently empowered by pretrained sequence-to-sequence models. However, there exists a gap between…

Computation and Language · Computer Science 2022-04-27 Peiyi Wang , Liang Chen , Tianyu Liu , Damai Dai , Yunbo Cao , Baobao Chang , Zhifang Sui

Large Language Models (LLMs) are a class of generative AI models built using the Transformer network, capable of leveraging vast datasets to identify, summarize, translate, predict, and generate language. LLMs promise to revolutionize…

Information Retrieval · Computer Science 2024-03-05 Chunhe Ni , Jiang Wu , Hongbo Wang , Wenran Lu , Chenwei Zhang

Spreading dynamics is a central topic in the physics of complex systems and network science, providing a unified framework for understanding how information, behaviors, and diseases propagate through interactions among system units. In many…

Physics and Society · Physics 2026-02-10 Shuyu Jiang , Hao Ren , Yichang Gao , Yi-Cheng Zhang , Li Qi , Dayong Xiao , Jie Fan , Rui Tang , Wei Wang

To support emerging language-based applications using dispersed and heterogeneous computing resources, the hybrid language model (HLM) offers a promising architecture, where an on-device small language model (SLM) generates draft tokens…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-26 Seungeun Oh , Jinhyuk Kim , Jihong Park , Seung-Woo Ko , Jinho Choi , Tony Q. S. Quek , Seong-Lyun Kim

The integration of biomolecular modeling with natural language (BL) has emerged as a promising interdisciplinary area at the intersection of artificial intelligence, chemistry and biology. This approach leverages the rich, multifaceted…

Computation and Language · Computer Science 2025-12-01 Qizhi Pei , Zhimeng Zhou , Kaiyuan Gao , Jinhua Zhu , Yue Wang , Zun Wang , Tao Qin , Lijun Wu , Rui Yan

Large language models (LLMs) leverage deep learning architectures to process and predict sequences of words, enabling them to perform a wide range of natural language processing tasks, such as translation, summarization, question answering,…

Computation and Language · Computer Science 2025-09-08 Mohammad Shahedur Rahman , Peng Gao , Yuede Ji

Artificial intelligence has demonstrated immense potential in scientific research. Within molecular science, it is revolutionizing the traditional computer-aided paradigm, ushering in a new era of deep learning. With recent progress in…

Biomolecules · Quantitative Biology 2024-03-22 Yi Xiao , Xiangxin Zhou , Qiang Liu , Liang Wang

Applications of Large Language Models~(LLMs) have evolved from simple text generators into complex software systems that integrate retrieval augmentation, tool invocation, and multi-turn interactions. Their inherent non-determinism,…

Software Engineering · Computer Science 2025-08-29 Wei Ma , Yixiao Yang , Qiang Hu , Shi Ying , Zhi Jin , Bo Du , Zhenchang Xing , Tianlin Li , Junjie Shi , Yang Liu , Linxiao Jiang

Scientific Large Language Models (Sci-LLMs) have emerged as a promising frontier for accelerating biological discovery. However, these models face a fundamental challenge when processing raw biomolecular sequences: the tokenization dilemma.…

Large language models (LLMs) have not only revolutionized the field of natural language processing (NLP) but also have the potential to bring a paradigm shift in many other fields due to their remarkable abilities of language understanding,…

Information Retrieval · Computer Science 2024-10-29 Qi Wang , Jindong Li , Shiqi Wang , Qianli Xing , Runliang Niu , He Kong , Rui Li , Guodong Long , Yi Chang , Chengqi Zhang

Large Language Models (LLMs) have recently garnered significant attention, primarily for their capabilities in text-based interactions. However, natural human interaction often relies on speech, necessitating a shift towards voice-based…

Computation and Language · Computer Science 2025-08-08 Wenqian Cui , Dianzhi Yu , Xiaoqi Jiao , Ziqiao Meng , Guangyan Zhang , Qichao Wang , Yiwen Guo , Irwin King
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