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In this paper, we introduce EHR-SeqSQL, a novel sequential text-to-SQL dataset for Electronic Health Record (EHR) databases. EHR-SeqSQL is designed to address critical yet underexplored aspects in text-to-SQL parsing: interactivity,…

Computation and Language · Computer Science 2024-07-31 Jaehee Ryu , Seonhee Cho , Gyubok Lee , Edward Choi

SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation, and optimization of advanced analysis methods for live cell single molecule…

Biological Physics · Physics 2017-05-08 Martin Lindén , Vladimir Ćurić , Alexis Boucharin , David Fange , Johan Elf

Cardiovascular MRI (CMR) is a non-invasive imaging modality that provides excellent soft-tissue contrast without the use of ionizing radiation. Physiological motions and limited speed of MRI data acquisition necessitate development of…

Image and Video Processing · Electrical Eng. & Systems 2020-08-13 Chong Chen , Yingmin Liu , Philip Schniter , Matthew Tong , Karolina Zareba , Orlando Simonetti , Lee Potter , Rizwan Ahmad

In medicine, reference curves serve as an important tool for everyday clinical practice. Pediatricians assess the growth process of children with the help of percentile curves serving as norm references. The mathematical methods for the…

We present Cogniscope, an open evaluation framework for studying longitudinal early-risk AI systems under controlled behavioral drift, sparse observations, delayed evidence, and heterogeneous progression patterns. Cogniscope combines two…

Human-Computer Interaction · Computer Science 2026-05-25 Mahfuza Farooque , Ananya Drishti , Mukhil Muruganantham Prakaash , Uttkarsh Agarwal , Zahra Abdul Basit , Asish Kondragunta

Online user studies of visualizations, visual encodings, and interaction techniques are ubiquitous in visualization research. Yet, designing, conducting, and analyzing studies effectively is still a major burden. Although various packages…

We introduce `Goxpyriment', a new open-source software framework for programming behavioral and cognitive experiments using the Go programming language. The library is designed to address some limitations of existing Python-based experiment…

Neurons and Cognition · Quantitative Biology 2026-04-17 Christophe Pallier , Julie Bonnaire , Marie-France Fourcade

Designing a robotic system that functions effectively within the specific environment of a Magnetic Resonance Imaging (MRI) scanner requires solving numerous technical issues, such as maintaining the robot's precision and stability under…

Robotics · Computer Science 2026-01-06 Wenhui Chu , Aobo Jin , Hardik A. Gohel

Multi-sequence Magnetic Resonance Imaging (MRI) offers remarkable versatility, enabling the distinct visualization of different tissue types. Nevertheless, the inherent heterogeneity among MRI sequences poses significant challenges to the…

Deep learning frameworks such as nnU-Net achieve state-of-the-art performance in brain lesion segmentation but remain difficult to deploy clinically due to heavy dependencies and monolithic design. We introduce \textit{StrokeSeg}, a modular…

Computer Vision and Pattern Recognition · Computer Science 2025-10-29 Yann Kerverdo , Florent Leray , Youwan Mahé , Stéphanie Leplaideur , Francesca Galassi

Concurrent systems are often complex and difficult to design. Choreographic languages, such as Multiparty Session Types (MPST), allow the description of global protocols of interactions by capturing valid patterns of interactions between…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-29 Telmo Ribeiro , José Proença , Mário Florido

The recently released Segment Anything Model (SAM) has shown powerful zero-shot segmentation capabilities through a semi-automatic annotation setup in which the user can provide a prompt in the form of clicks or bounding boxes. There is…

Computer Vision and Pattern Recognition · Computer Science 2024-06-04 Benjamin Towle , Xin Chen , Ke Zhou

Analyzing CT scans, MRIs and X-rays is pivotal in diagnosing and treating diseases. However, detecting and identifying abnormalities from such medical images is a time-intensive process that requires expert analysis and is prone to…

Image and Video Processing · Electrical Eng. & Systems 2025-03-14 Daniel Syomichev , Padmini Gopinath , Guang-Lin Wei , Eric Chang , Ian Gordon , Amanuel Seifu , Rahul Pemmaraju , Neehar Peri , James Purtilo

In this extended abstract, we have introduced a highly memory-efficient state vector simulation of quantum circuits premised on data compression, harnessing the capabilities of both CPUs and GPUs. We have elucidated the inherent challenges…

Quantum Physics · Physics 2023-10-02 Boyuan Zhang , Bo Fang , Qiang Guan , Ang Li , Dingwen Tao

Simulation studies allow us to explore the properties of statistical methods. They provide a powerful tool with a multiplicity of aims; among others: evaluating and comparing new or existing statistical methods, assessing violations of…

Applications · Statistics 2020-05-05 Alessandro Gasparini , Tim P. Morris , Michael J. Crowther

In this paper, we introduce VeriQBench -- an open source benchmark for quantum circuits. It offers high-level quantum circuit abstractions of various circuit types, including 1) combinational, 2) dynamic, 3) sequential, and 4) variational…

Quantum Physics · Physics 2022-06-23 Kean Chen , Wang Fang , Ji Guan , Xin Hong , Mingyu Huang , Junyi Liu , Qisheng Wang , Mingsheng Ying

This paper describes HyperStream, a large-scale, flexible and robust software package, written in the Python language, for processing streaming data with workflow creation capabilities. HyperStream overcomes the limitations of other…

Machine Learning · Computer Science 2019-08-09 Tom Diethe , Meelis Kull , Niall Twomey , Kacper Sokol , Hao Song , Miquel Perello-Nieto , Emma Tonkin , Peter Flach

We present Mirror, an open-source platform for data exploration and analysis powered by large language models. Mirror offers an intuitive natural language interface for querying databases, and automatically generates executable SQL commands…

Databases · Computer Science 2023-03-16 Canwen Xu , Julian McAuley , Penghan Wang

With growing urbanization worldwide, efficient management of traffic infrastructure is critical for transportation agencies and city planners. It is essential to have tools that help analyze large volumes of stored traffic data and make…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-06 Rahul Sengupta , Nooshin Yousefzadeh , Manav Sanghvi , Yash Ranjan , Anand Rangarajan , Sanjay Ranka , Yashaswi Karnati , Jeremy Dilmore , Tushar Patel , Ryan Casburn

We present the design of a flexible quantum-chemical method development framework, which supports employing any type of basis function. This design has been implemented in the light-weight program package molsturm, yielding a…

Chemical Physics · Physics 2018-11-15 Michael F. Herbst , Andreas Dreuw , James Emil Avery