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TomoSAM has been developed to integrate the cutting-edge Segment Anything Model (SAM) into 3D Slicer, a highly capable software platform used for 3D image processing and visualization. SAM is a promptable deep learning model that is able to…

Computer Vision and Pattern Recognition · Computer Science 2023-06-16 Federico Semeraro , Alexandre Quintart , Sergio Fraile Izquierdo , Joseph C. Ferguson

The availability of open-source molecular simulation software packages allows scientists and engineers to focus on running and analyzing simulations without having to write, parallelize, and validate their own simulation software. While…

Computational Physics · Physics 2025-10-03 Simon Gravelle , Cecilia M. S. Alvares , Jacob R. Gissinger , Axel Kohlmeyer

In the rapidly evolving landscape of medical imaging diagnostics, achieving high accuracy while preserving computational efficiency remains a formidable challenge. This work presents \texttt{DeepMediX}, a groundbreaking, resource-efficient…

Computer Vision and Pattern Recognition · Computer Science 2023-07-04 Kishore Babu Nampalle , Pradeep Singh , Uppala Vivek Narayan , Balasubramanian Raman

In this proceedings we describe the current development status and recent technical achievements of Qibo, an open-source framework for quantum simulation. After a concise overview of the project goal, we introduce the modular layout for…

Quantum Physics · Physics 2023-03-01 Stefano Carrazza , Stavros Efthymiou , Marco Lazzarin , Andrea Pasquale

We present QuReed, an open-source quantum simulation framework designed to bridge gaps between quantum theory, experimental community and engineering. With Quantum Mechanics maturing and holding significant potential beyond quantum…

Quantum Physics · Physics 2024-06-13 Simon Sekavčnik , Kareem H. El-Safty , Janis Nötzel

We propose RecSim, a configurable platform for authoring simulation environments for recommender systems (RSs) that naturally supports sequential interaction with users. RecSim allows the creation of new environments that reflect particular…

Machine Learning · Computer Science 2019-09-27 Eugene Ie , Chih-wei Hsu , Martin Mladenov , Vihan Jain , Sanmit Narvekar , Jing Wang , Rui Wu , Craig Boutilier

Understanding the relationship between training data and model behavior during pretraining is crucial, but existing workflows make this process cumbersome, fragmented, and often inaccessible to researchers. We present TokenSmith, an…

Deep segmentation models often face the failure risks when the testing image presents unseen distributions. Improving model robustness against these risks is crucial for the large-scale clinical application of deep models. In this study,…

Computer Vision and Pattern Recognition · Computer Science 2022-07-04 Yuhao Huang , Xin Yang , Xiaoqiong Huang , Jiamin Liang , Xinrui Zhou , Cheng Chen , Haoran Dou , Xindi Hu , Yan Cao , Dong Ni

In this paper, we present sequeval, a software tool capable of performing the offline evaluation of a recommender system designed to suggest a sequence of items. A sequence-based recommender is trained considering the sequences already…

Information Retrieval · Computer Science 2018-11-30 Diego Monti , Enrico Palumbo , Giuseppe Rizzo , Maurizio Morisio

Molecular visualization software has long supported research and education in chemical and structural sciences, but consumer devices constrained to 2D inputs and outputs pose two major challenges: they poorly convey 3D nature, and 3D…

Chemical Physics · Physics 2025-09-05 Luciano A. Abriata

Machine Learning (ML) and Deep Learning (DL) innovations are being introduced at such a rapid pace that researchers are hard-pressed to analyze and study them. The complicated procedures for evaluating innovations, along with the lack of…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-20 Abdul Dakkak , Cheng Li , Jinjun Xiong , Wen-mei Hwu

This paper introduces CompressedMediQ, a novel hybrid quantum-classical machine learning pipeline specifically developed to address the computational challenges associated with high-dimensional multi-class neuroimaging data analysis.…

Quantum Physics · Physics 2024-09-24 Kuan-Cheng Chen , Yi-Tien Li , Tai-Yu Li , Chen-Yu Liu , Po-Heng Li , Cheng-Yu Chen

We present a composable design scheme for the development of hybrid quantum/classical algorithms and workflows for applications of quantum simulation. Our object-oriented approach is based on constructing an expressive set of common data…

Simulation has become an essential component of designing and developing scientific experiments. The conventional procedural approach to coding simulations of complex experiments is often error-prone, hard to interpret, and inflexible,…

Computational Physics · Physics 2023-08-09 Peter Sun , John A. Marohn

Twistronics is an emerging and captivating field in condensed matter physics and material science. However, accurately and efficiently calculating the electronic structures of twisted systems remains a significant challenge. To address…

Materials Science · Physics 2026-05-27 Junxi Yu , Yichen Liu , Cheng-Cheng Liu

Background and Objective: Hemodynamic analysis of blood flow through arteries and veins is critical for diagnosing cardiovascular diseases, such as aneurysms and stenoses, and for investigating cardiovascular parameters, such as turbulence…

Multimodal summarization with multimodal output (MSMO) has emerged as a promising research direction. Nonetheless, numerous limitations exist within existing public MSMO datasets, including insufficient maintenance, data inaccessibility,…

Computer Vision and Pattern Recognition · Computer Science 2023-11-21 Jielin Qiu , Jiacheng Zhu , William Han , Aditesh Kumar , Karthik Mittal , Claire Jin , Zhengyuan Yang , Linjie Li , Jianfeng Wang , Ding Zhao , Bo Li , Lijuan Wang

Purpose: Widespread adoption and methodological advancement of Magnetic Resonance Fingerprinting (MRF) are limited by the lack of unified, reproducible implementation frameworks and fragmented open-source tools. To address these barriers,…

We have developed a software library that simulates noisy quantum logic circuits. We represent quantum states by their density matrices in the Pauli basis, and incorporate possible errors in initialisation, logic gates, memory and…

Cardiac Magnetic Resonance (CMR) is established as a non-invasive imaging technique for evaluation of heart function, anatomy, and myocardial tissue characterization. Quantitative biomarkers are central for diagnosis and management of heart…

Image and Video Processing · Electrical Eng. & Systems 2024-04-04 Hui Xue , Rhodri H Davies , James Howard , Hunain Shiwani , Azaan Rehman , Iain Pierce , Henry Procter , Marianna Fontana , James C Moon , Eylem Levelt , Peter Kellman
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