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We consider the problem of molecular graph generation using deep models. While graphs are discrete, most existing methods use continuous latent variables, resulting in inaccurate modeling of discrete graph structures. In this work, we…

Machine Learning · Computer Science 2021-06-03 Youzhi Luo , Keqiang Yan , Shuiwang Ji

We apply numerical optimization and linear algebra algorithms for classical computers to the problem of automatically synthesizing algorithms for quantum computers. Using our framework, we apply several common techniques from these…

Numerical Analysis · Mathematics 2025-09-16 Yuxin Huang , Benjamin E. Grossman-Ponemon , David A. B. Hyde

Although QUDA allows for an efficient computation of many QCD quantities, it is surprinsingly lacking tools to evaluate disconnected diagrams, for which GPUs are specially well suited. We aim to fill this gap by creating our own branch of…

High Energy Physics - Lattice · Physics 2014-02-03 Constantia Alexandrou , Kyriacos Hadjiyiannakou , Giannis Koutsou , Alexei Strelchenko , Alejandro Vaquero

In this paper we introduce the first efficient external-memory algorithm to compute the bisimilarity equivalence classes of a directed acyclic graph (DAG). DAGs are commonly used to model data in a wide variety of practical applications,…

Data Structures and Algorithms · Computer Science 2018-03-05 Jelle Hellings , George H. L. Fletcher , Herman Haverkort

Approximating partial differential equations for extensive industrial and scientific applications requires leveraging the power of modern high-performance computing. In large-scale parallel computations, the geometrical discretisation…

Numerical Analysis · Mathematics 2024-12-30 Pere A. Martorell , Santiago Badia

Decision Diagrams (DDs) have emerged as a powerful tool for discrete optimization, with rapidly growing adoption. DDs are directed acyclic layered graphs; restricted DDs are a generalized greedy heuristic for finding feasible solutions, and…

Optimization and Control · Mathematics 2026-02-27 Isaac Rudich , Louis-Martin Rousseau

Certifying feasibility in decision-making, critical in many industries, can be framed as a constraint satisfaction problem. This paper focuses on characterising a subset of parameter values from an a priori set that satisfy constraints on a…

Systems and Control · Electrical Eng. & Systems 2025-11-14 Max Mowbray , Nilay Shah , Benoît Chachuat

To improve the utility of learning applications and render machine learning solutions feasible for complex applications, a substantial amount of heavy computations is needed. Thus, it is essential to delegate the computations among several…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-04-29 Homa Esfahanizadeh , Alejandro Cohen , Muriel Medard

Computation graphs are Directed Acyclic Graphs (DAGs) where the nodes correspond to mathematical operations and are used widely as abstractions in optimizations of neural networks. The device placement problem aims to identify optimal…

Bayesian causal discovery offers the power to quantify epistemic uncertainties among a broad range of structurally diverse causal theories potentially explaining the data, represented in forms of directed acyclic graphs (DAGs). However,…

Machine Learning · Computer Science 2024-08-30 Nu Hoang , Bao Duong , Thin Nguyen

We present Gridap, a new scientific software library for the numerical approximation of partial differential equations (PDEs) using grid-based approximations. Gridap is an open-source software project exclusively written in the Julia…

Mathematical Software · Computer Science 2020-04-23 Francesc Verdugo , Santiago Badia

High-dimensional nonlinear optimization problems subject to nonlinear constraints can appear in several contexts including constrained physical and dynamical systems, statistical estimation, and other numerical models. Feasible optimization…

Optimization and Control · Mathematics 2021-11-08 Kevin S. Silmore , James W. Swan

The analysis of massive scientific data often happens in the form of workflows with interdependent tasks. When such a scientific workflow needs to be scheduled on a parallel or distributed system, one usually represents the workflow as a…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-31 Svetlana Kulagina , Anne Benoit , Henning Meyerhenke

We consider the PC-algorithm Spirtes et. al. (2000) for estimating the skeleton of a very high-dimensional acyclic directed graph (DAG) with corresponding Gaussian distribution. The PC-algorithm is computationally feasible for sparse…

Statistics Theory · Mathematics 2007-06-13 Markus Kalisch , Peter Buehlmann

We present an open source computational framework geared towards the efficient numerical investigation of open quantum systems written in the Julia programming language. Built exclusively in Julia and based on standard quantum optics…

Quantum Physics · Physics 2018-03-14 Sebastian Krämer , David Plankensteiner , Laurin Ostermann , Helmut Ritsch

This paper shows how numerical methods on a regular grid in a box can be used to generate numerical schemes for problems in general smooth domains contained in the box with no need for a domain specific discretization. The focus is mainly…

Numerical Analysis · Mathematics 2016-04-14 Patrick Guidotti

In this paper, we consider the problem of scheduling an application on a parallel computational platform. The application is a particular task graph, either a linear chain of tasks, or a set of independent tasks. The platform is made of…

Data Structures and Algorithms · Computer Science 2012-10-18 Guillaume Aupy , Anne Benoit

Estimating the structure of directed acyclic graphs (DAGs) from observational data remains a significant challenge in machine learning. Most research in this area concentrates on learning a single DAG for the entire population. This paper…

Machine Learning · Statistics 2024-02-21 Ryan Thompson , Edwin V. Bonilla , Robert Kohn

We introduce and implement GraphDD: an efficient method for real-time, circuit-specific, optimal embedding of dynamical decoupling (DD) into executable quantum algorithms. We demonstrate that for an arbitrary quantum circuit, GraphDD…

Quantum Physics · Physics 2025-06-13 Paul Coote , Roman Dimov , Smarak Maity , Gavin S. Hartnett , Michael J. Biercuk , Yuval Baum

Graphs are widely used in various fields of computer science. They have also found application in unrelated areas, leading to a diverse range of problems. These problems can be modeled as relationships between entities in various contexts,…

Data Structures and Algorithms · Computer Science 2024-05-20 Davide Rucci