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Best match graphs (BMG) are a key intermediate in graph-based orthology detection and contain a large amount of information on the gene tree. We provide a near-cubic algorithm to determine whether a BMG is binary-explainable, i.e., whether…
The balanced connected $k$-partition problem (\textsc{bcp}) is a classic problem, which consists in partitioning the set of vertices of a vertex-weighted connected graph into a collection of~$k$ classes such that each class induces a…
The Maximally Diverse Grouping Problem (MDGP) is the problem of assigning a set of elements to mutually disjoint groups in order to maximise the overall diversity between the elements. Because the MDGP is NP-complete, most studies have…
Typical behavior of the linear programming (LP) problem is studied as a relaxation of the minimum vertex cover, a type of integer programming (IP) problem. A lattice-gas model on the Erd\"os-R\'enyi random graphs of $\alpha$-uniform…
We suggest employing graph sparsification as a pre-processing step for maxcut programs using the QUBO solver. Quantum(-inspired) algorithms are recognized for their potential efficiency in handling quadratic unconstrained binary…
The graph partitioning problem is a well-known NP-hard problem. In this paper, we formulate a 0-1 quadratic integer programming model for the graph partitioning problem with vertex weight constraints and fixed vertex constraints, and…
Graphs are fundamental objects that find widespread applications across computer science and beyond. Graph Theory has yielded deep insights about structural properties of various families of graphs, which are leveraged in the design and…
Multigraph matching is a recent variant of the graph matching problem. In this framework, the optimization procedure considers several graphs and enforces the consistency of the matches along the graphs. This constraint can be formalized as…
In the last few years, graph convolutional networks (GCN) have become a popular research direction in the machine learning community to tackle NP-hard combinatorial optimization problems (COPs) defined on graphs. While the obtained results…
In this paper we study the generalized vertex cover problem (GVC), which is a generalization of various well studied combinatorial optimization problems. GVC is shown to be equivalent to the unconstrained binary quadratic programming…
In this note, we consider the antibandwidth problem, also known as dual bandwidth problem, separation problem and maximum differential coloring problem. Given a labeled graph (i.e., a numbering of the vertices of a graph), the antibandwidth…
Mixed Integer Linear Programming (MILP) is a pillar of mathematical optimization that offers a powerful modeling language for a wide range of applications. During the past decades, enormous algorithmic progress has been made in solving…
Graph modification problems, which aim to find a small set of modifications to a graph so that it satisfies a desired property, have been studied for several special graph classes. The literature is rather rich in NP-completeness results…
This paper describes several new problems and ideas concerning algebraic geometry and complexity theory. It first uses the idea of coloring graphs with elements of finite fields. This procedure then shows that graph coloring problems can be…
GP 2 is a non-deterministic programming language for computing by graph transformation. One of the design goals for GP 2 is syntactic and semantic simplicity, to facilitate formal reasoning about programs. In this paper, we demonstrate with…
In this article, we introduce and study the Quadratic Bin Packing Problem (QBPP), which generalizes the classical bin packing problem by introducing a fixed cost for each used bin and a pairwise cost (or profit) incurred whenever two items…
Given a graph $G$, the NP-hard Maximum Planar Subgraph problem (MPS) asks for a planar subgraph of $G$ with the maximum number of edges. There are several heuristic, approximative, and exact algorithms to tackle the problem, but---to the…
The graph partition problem is the problem of partitioning the vertex set of a graph into a fixed number of sets of given sizes such that the sum of weights of edges joining different sets is optimized. In this paper we simplify a known…
Quadratic Unconstrained Binary Optimization (QUBO) is a generic technique to model various NP-hard combinatorial optimization problems in the form of binary variables. The Hamiltonian function is often used to formulate QUBO problems where…
Machine learning is increasingly used to improve decisions within branch-and-bound algorithms for mixed-integer programming. Many existing approaches rely on deep learning, which often requires very large training datasets and substantial…