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Explaining why the species lives at a particular location is important for understanding ecological systems and conserving biodiversity. However, existing ecological workflows are fragmented and often inaccessible to non-specialists. We…

Computer Vision and Pattern Recognition · Computer Science 2025-09-10 Yutong Zhou , Masahiro Ryo

The rapid advancement of artificial intelligence (AI) in weather research has been driven by the ability to learn from large, high-dimensional datasets. However, this progress also poses significant challenges, particularly regarding the…

Machine Learning · Computer Science 2024-10-15 Qian Liu , Bing Gong , Xiaoran Zhuang , Xiaohui Zhong , Zhiming Kang , Hao Li

A fundamental challenge in developing data-driven approaches to ecological systems for tasks such as state estimation and prediction is the paucity of the observational or measurement data. For example, modern machine-learning techniques…

Quantitative Methods · Quantitative Biology 2024-10-11 Zheng-Meng Zhai , Bryan Glaz , Mulugeta Haile , Ying-Cheng Lai

In our previous work, we proposed that engrams in the brain could be biologically implemented as autoencoders over recurrent neural networks. These autoencoders would comprise basic excitatory/inhibitory motifs, with credit assignment…

Neural and Evolutionary Computing · Computer Science 2024-07-24 J Marco de Lucas

Undocumented species represent one of the largest hurdles for conservation efforts due to the uncertainty they introduce into conservation planning. Until the distribution of earth's biodiversity is better understood, substantial conjecture…

Populations and Evolution · Quantitative Biology 2023-08-21 Sky Button , Amaël Borzée

Sub-symbolic artificial intelligence methods dominate the fields of environment-type classification and Simultaneous Localisation and Mapping. However, a significant area overlooked within these fields is solution transparency for the…

Artificial Intelligence · Computer Science 2024-03-26 Brandon Curtis Colelough

We use deep autoencoder neural networks to draw a chart of the heterotic $\mathbb{Z}_6$-II orbifold landscape. Even though the autoencoder is trained without knowing the phenomenological properties of the $\mathbb{Z}_6$-II orbifold models,…

High Energy Physics - Theory · Physics 2019-02-12 Andreas Mütter , Erik Parr , Patrick K. S. Vaudrevange

Accurate classification of terrestrial habitats is critical for biodiversity conservation, ecological monitoring, and land-use planning. Several habitat classification schemes are in use, typically based on analysis of satellite imagery…

Computer Vision and Pattern Recognition · Computer Science 2025-08-28 Mahdis Tourian , Sareh Rowlands , Remy Vandaele , Max Fancourt , Rebecca Mein , Hywel T. P. Williams

The EUNIS habitat classification is crucial for categorising European habitats, supporting European policy on nature conservation and implementing the Nature Restoration Law. To meet the growing demand for detailed and accurate habitat…

Compressive sensing (CS) reconstructs images from sub-Nyquist measurements by solving a sparsity-regularized inverse problem. Traditional CS solvers use iterative optimizers with hand crafted sparsifiers, while early data-driven methods…

Computer Vision and Pattern Recognition · Computer Science 2023-06-02 Pamuditha Somarathne , Tharindu Wickremasinghe , Amashi Niwarthana , A. Thieshanthan , Chamira U. S. Edussooriya , Dushan N. Wadduwage

Corals are the primary habitat-building life-form on reefs that support a quarter of the species in the ocean. A coral reef ecosystem usually consists of reefs, each of which is like a tall building in any city. These reef-building corals…

Computer Vision and Pattern Recognition · Computer Science 2022-12-09 Jiageng Zhong , Ming Li , Hanqi Zhang , Jiangying Qin

The proliferation of high-dimensional datasets in fields such as genomics, healthcare, and finance has created an urgent need for machine learning models that are both highly accurate and inherently interpretable. While traditional deep…

Machine Learning · Computer Science 2025-10-28 Rekha R Nair , Tina Babu , Alavikunhu Panthakkan , Hussain Al-Ahmad , Balamurugan Balusamy

Biased attributes, spuriously correlated with target labels in a dataset, can problematically lead to neural networks that learn improper shortcuts for classifications and limit their capabilities for out-of-distribution (OOD)…

Computer Vision and Pattern Recognition · Computer Science 2024-03-22 Jinyung Hong , Eun Som Jeon , Changhoon Kim , Keun Hee Park , Utkarsh Nath , Yezhou Yang , Pavan Turaga , Theodore P. Pavlic

Hierarchical LiDAR geometry compression encodes voxel occupancies from low to high bit-depths, yet prior methods treat each depth independently and re-estimate local context from coordinates at every level, limiting compression efficiency.…

Image and Video Processing · Electrical Eng. & Systems 2026-05-01 Junsik Kim , Gun Bang , Soowoong Kim

Hyperspectral tree species classification is challenging due to limited and imbalanced class labels, spectral mixing (overlapping light signatures from multiple species), and ecological heterogeneity (variability among ecological systems).…

Fish farms represent a growing source of disturbance to shallow benthic ecosystems like seagrass meadows. Despite some existing insights on the mechanisms underlying decline, efficient tools to quantitatively predict the response of benthic…

Predicting river flow in places without streamflow records is challenging because basins respond differently to climate, terrain, vegetation, and soils. Traditional basin attributes describe some of these differences, but they cannot fully…

Machine Learning · Computer Science 2026-01-06 Pengfei Qu , Wenyu Ouyang , Chi Zhang , Yikai Chai , Shuolong Xu , Lei Ye , Yongri Piao , Miao Zhang , Huchuan Lu

Rapid biodiversity loss underscore the urgency of effective monitoring, yet manual surveys remain resource-intensive. While on-device AI offers a scalable alternative, its performance in the wild is often challenged by environmental…

Artificial Intelligence · Computer Science 2026-05-19 Jiaxing Li , Hao Fang , Chi Xu , Miao Zhang , Jiangchuan Liu , William I. Atlas , Katrina M. Connors , Mark A. Spoljaric

While many phenomena in physics and engineering are formally high-dimensional, their long-time dynamics often live on a lower-dimensional manifold. The present work introduces an autoencoder framework that combines implicit regularization…

Machine Learning · Computer Science 2023-12-07 Kevin Zeng , Carlos E. Pérez De Jesús , Andrew J. Fox , Michael D. Graham

Scalable and generalizable physics-aware deep learning has long been considered a significant challenge with various applications across diverse domains ranging from robotics to molecular dynamics. Central to almost all physical systems are…

Machine Learning · Computer Science 2026-02-04 Pranav Vaidhyanathan , Aristotelis Papatheodorou , Mark T. Mitchison , Natalia Ares , Ioannis Havoutis