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Decoding the linguistic intricacies of the genome is a crucial problem in biology, and pre-trained foundational models such as DNABERT and Nucleotide Transformer have made significant strides in this area. Existing works have largely hinged…

Genomics · Quantitative Biology 2024-03-20 Zhihan Zhou , Yanrong Ji , Weijian Li , Pratik Dutta , Ramana Davuluri , Han Liu

Retrieving binary code via natural language queries is a pivotal capability for downstream tasks in the software security domain, such as vulnerability detection and malware analysis. However, it is challenging to identify binary functions…

Software Engineering · Computer Science 2026-01-06 Guoqiang Chen , Lingyun Ying , Ziyang Song , Daguang Liu , Qiang Wang , Zhiqi Wang , Li Hu , Shaoyin Cheng , Weiming Zhang , Nenghai Yu

Existing Machine Translation (MT) research often suggests a single, fixed set of hyperparameters for word segmentation models, symmetric Byte Pair Encoding (BPE), which applies the same number of merge operations (NMO) to train tokenizers…

Computation and Language · Computer Science 2026-02-16 Saumitra Yadav , Manish Shrivastava

Byte-pair encoding (BPE) is a ubiquitous algorithm in the subword tokenization process of language models as it provides multiple benefits. However, this process is solely based on pre-training data statistics, making it hard for the…

Computation and Language · Computer Science 2021-09-27 Gustavo Aguilar , Bryan McCann , Tong Niu , Nazneen Rajani , Nitish Keskar , Thamar Solorio

We present BPEmb, a collection of pre-trained subword unit embeddings in 275 languages, based on Byte-Pair Encoding (BPE). In an evaluation using fine-grained entity typing as testbed, BPEmb performs competitively, and for some languages…

Computation and Language · Computer Science 2017-10-09 Benjamin Heinzerling , Michael Strube

Tackling binary program analysis problems has traditionally implied manually defining rules and heuristics, a tedious and time-consuming task for human analysts. In order to improve automation and scalability, we propose an alternative…

Cryptography and Security · Computer Science 2021-05-25 Shushan Arakelyan , Sima Arasteh , Christophe Hauser , Erik Kline , Aram Galstyan

The success of pretrained transformer language models (LMs) in natural language processing has led to a wide range of pretraining setups. In particular, these models employ a variety of subword tokenization methods, most notably byte-pair…

Computation and Language · Computer Science 2020-10-06 Kaj Bostrom , Greg Durrett

The assumption across nearly all language model (LM) tokenization schemes is that tokens should be subwords, i.e., contained within word boundaries. While providing a seemingly reasonable inductive bias, is this common practice limiting the…

Computation and Language · Computer Science 2025-08-28 Alisa Liu , Jonathan Hayase , Valentin Hofmann , Sewoong Oh , Noah A. Smith , Yejin Choi

Currently, many studies view DNA sequences as a special type of language and utilize Transformers to model them. These studies use fixed-length k-mer segmentation and BPE subword tokenization but lack a systematic evaluation to determine…

Computation and Language · Computer Science 2025-07-22 Chenlei Gong , Yuanhe Tian , Lei Mao , Yan Song

Adapting language models to new data distributions by simple finetuning is challenging. This is due to the rigidity of their subword tokenizers, which typically remain unchanged during adaptation. This inflexibility often leads to…

Computation and Language · Computer Science 2026-05-14 Abraham Toluwase Owodunni , Orevaoghene Ahia , Sachin Kumar

As large language models move toward million-token context windows, CPU tokenizers become a major slowdown because they process text one step at a time while powerful GPUs sit unused. We built a GPU-based byte-level BPE tokenizer that…

Computation and Language · Computer Science 2026-03-04 Venu Gopal Kadamba , Kanishkha Jaisankar

Tokenization is associated with many poorly understood shortcomings in language models (LMs), yet remains an important component for long sequence scaling purposes. This work studies how tokenization impacts model performance by analyzing…

Computation and Language · Computer Science 2025-04-15 Buu Phan , Brandon Amos , Itai Gat , Marton Havasi , Matthew Muckley , Karen Ullrich

The cold-start issue is the challenge when we talk about recommender systems, especially in the case when we do not have the past interaction data of new users or new items. Content-based features or hybrid solutions are common as…

Information Retrieval · Computer Science 2025-09-17 Yushang Zhao , Xinyue Han , Qian Leng , Qianyi Sun , Haotian Lyu , Chengrui Zhou

Diffusion-based text-to-image models have demonstrated impressive achievements in diversity and aesthetics but struggle to generate images with legible visual texts. Existing backbone models have limitations such as misspelling, failing to…

Computer Vision and Pattern Recognition · Computer Science 2024-10-08 Wenbo Li , Guohao Li , Zhibin Lan , Xue Xu , Wanru Zhuang , Jiachen Liu , Xinyan Xiao , Jinsong Su

Understanding binary code is an essential but complex software engineering task for reverse engineering, malware analysis, and compiler optimization. Unlike source code, binary code has limited semantic information, which makes it…

Software Engineering · Computer Science 2022-10-12 Yifan Zhang

Byte-based machine translation systems have shown significant potential in massively multilingual settings. Unicode encoding, which maps each character to specific byte(s), eliminates the emergence of unknown words, even in new languages.…

Computation and Language · Computer Science 2025-02-10 Langlin Huang , Mengyu Bu , Yang Feng

In biomedical literature, it is common for entity boundaries to not align with word boundaries. Therefore, effective identification of entity spans requires approaches capable of considering tokens that are smaller than words. We introduce…

Computation and Language · Computer Science 2018-09-25 Emily Sheng , Prem Natarajan

Tokenizer adaptation plays an important role in adapting pre-trained language models to new domains or languages. In this work, we address two complementary aspects of this process: vocabulary extension and pruning. The common approach to…

Computation and Language · Computer Science 2026-03-24 Taido Purason , Pavel Chizhov , Ivan P. Yamshchikov , Mark Fishel

Binary analysis is a core component of many critical security tasks, including reverse engineering, malware analysis, and vulnerability detection. Manual analysis is often time-consuming, but identifying commonly-used or previously-seen…

Machine Learning · Computer Science 2024-10-31 Rebecca Saul , Chang Liu , Noah Fleischmann , Richard Zak , Kristopher Micinski , Edward Raff , James Holt

Large language models route every input through a learned embedding table of shape |V| x d_model, consuming hundreds of millions to billions of trainable parameters at frontier scale. We introduce Kronecker Embeddings, a deterministic…

Computation and Language · Computer Science 2026-05-29 Rohan Shravan