Related papers: Merging RLBWTs adaptively

We study the impact that string reversal can have on several repetitiveness measures. First, we exhibit an infinite family of strings where the number, $r$, of runs in the run-length encoding of the Burrows--Wheeler transform (BWT) can…

We present a combination of the Mixed-Echelon-Hermite transformation and the Double-Bounded Reduction for systems of linear mixed arithmetic that preserve satisfiability and can be computed in polynomial time. Together, the two…

In this paper we revisit the classical regular expression matching problem, namely, given a regular expression $R$ and a string $Q$, decide if $Q$ matches one of the strings specified by $R$. Let $m$ and $n$ be the length of $R$ and $Q$,…

In this article, we study Momentum Light Ray Transform (MLRT) on symmetric tensor fields. MLRT is an integral transform in time-space domain ($(t,x)\in \mathbb{R}^{1+n}$), which integrates a scalar function or a tensor field along the light…

A wavelet forest for a text $T [1..n]$ over an alphabet $\sigma$ takes $n H_0 (T) + o (n \log \sigma)$ bits of space and supports access and rank on $T$ in $O (\log \sigma)$ time. K\"arkk\"ainen and Puglisi (2011) implicitly introduced…

We propose a new approach to combine Restricted Boltzmann Machines (RBMs) that can be used to solve combinatorial optimization problems. This allows synthesis of larger models from smaller RBMs that have been pretrained, thus effectively…

Data-centric ML pipelines extend traditional machine learning (ML) pipelines -- of feature transformations and ML model training -- by outer loops for data cleaning, augmentation, and feature engineering to create high-quality input data.…

We study the influence of a graph parameter called modular-width on the time complexity for optimally solving well-known polynomial problems such as Maximum Matching, Triangle Counting, and Maximum $s$-$t$ Vertex-Capacitated Flow. The…

String kernels are typically used to compare genome-scale sequences whose length makes alignment impractical, yet their computation is based on data structures that are either space-inefficient, or incur large slowdowns. We show that a…

We present a novel bit-parallel representation, based on the run-length encoding, of the nondeterministic KMP and suffix automata for a string $P$ with at least two distinct symbols. Our method is targeted to the case of long strings over…

Future robotic systems operating in real-world environments will require on-board embodied intelligence without continuous cloud connection, balancing capabilities with constraints on computational power and memory. This work presents an…

We present a parallel algorithm (EREW PRAM algorithm) for linked lists contraction. We show that when we contract a linked list from size $n$ to size $n/c$ for a suitable constant $c$ we can pack the linked list into an array of size $n/d$…

The k-spectrum of a string is the set of all distinct substrings of length k occurring in the string. K-spectra have many applications in bioinformatics including pseudoalignment and genome assembly. The Spectral Burrows-Wheeler Transform…

We consider a simple linear reversible isomerization reaction A <--> B under subdiffusion described by continuous time random walks (CTRW). The reactants' transformations take place independently on the motion and are described by constant…

A degenerate or indeterminate string on an alphabet $\Sigma$ is a sequence of non-empty subsets of $\Sigma$. Given a degenerate string $t$ of length $n$, we present a new method based on the Burrows--Wheeler transform for searching for a…

Mantaci et al. [TCS 2007] defined the eBWT to extend the definition of the BWT to a collection of strings, however, since this introduction, it has been used more generally to describe any BWT of a collection of strings and the fundamental…

Transformers have achieved remarkable results in single-image super-resolution (SR). However, the challenge of balancing model performance and complexity has hindered their application in lightweight SR (LSR). To tackle this challenge, we…

Subordinating a random walk to a renewal process yields a continuous time random walk (CTRW) model for diffusion, including the possibility of anomalous diffusion. Transition densities of scaling limits of power law CTRWs have been shown to…

Large Transformer models routinely achieve state-of-the-art results on a number of tasks but training these models can be prohibitively costly, especially on long sequences. We introduce two techniques to improve the efficiency of…

We show that any permutation of ${1,2,...,N}$ can be written as the product of two involutions. As a consequence, any permutation of the elements of an array can be performed in-place in parallel in time O(1). In the case where the…