English
Related papers

Related papers: AssayMatch: Learning to Select Data for Molecular …

200 papers

Feature selection often leads to increased model interpretability, faster computation, and improved model performance by discarding irrelevant or redundant features. While feature selection is a well-studied problem with many widely-used…

Machine Learning · Statistics 2021-02-12 Tianyi Yao , Genevera I. Allen

Deep learning models often require large amounts of data for training, leading to increased costs. It is particularly challenging in medical imaging, i.e., gathering distributed data for centralized training, and meanwhile, obtaining…

Computer Vision and Pattern Recognition · Computer Science 2023-06-27 Zhenyu Tang , Shaoting Zhang , Xiaosong Wang

We introduce MultiMatch, a novel semi-supervised learning (SSL) algorithm combining the paradigms of co-training and consistency regularization with pseudo-labeling. At its core, MultiMatch features a pseudo-label weighting module designed…

Computation and Language · Computer Science 2025-11-04 Iustin Sirbu , Robert-Adrian Popovici , Cornelia Caragea , Stefan Trausan-Matu , Traian Rebedea

We present Azimuth, an open-source and easy-to-use tool to perform error analysis for text classification. Compared to other stages of the ML development cycle, such as model training and hyper-parameter tuning, the process and tooling for…

Neural networks and deep learning are changing the way that artificial intelligence is being done. Efficiently choosing a suitable network architecture and fine-tune its hyper-parameters for a specific dataset is a time-consuming task given…

Machine Learning · Computer Science 2019-05-16 David Laredo , Yulin Qin , Oliver Schütze , Jian-Qiao Sun

The quality of underlying training data is very crucial for building performant machine learning models with wider generalizabilty. However, current machine learning (ML) tools lack streamlined processes for improving the data quality. So,…

Machine Learning · Computer Science 2021-12-16 Atindriyo Sanyal , Vikram Chatterji , Nidhi Vyas , Ben Epstein , Nikita Demir , Anthony Corletti

Data-driven molecular discovery leverages artificial intelligence/machine learning (AI/ML) and generative modeling to filter and design novel molecules. Discovering novel molecules requires accurate out-of-distribution (OOD) predictions,…

Despite deep learning has achieved great success, it often relies on a large amount of training data with accurate labels, which are expensive and time-consuming to collect. A prominent direction to reduce the cost is to learn with noisy…

Machine Learning · Computer Science 2024-01-31 Chuanyang Hu , Shipeng Yan , Zhitong Gao , Xuming He

We introduce Matched Machine Learning, a framework that combines the flexibility of machine learning black boxes with the interpretability of matching, a longstanding tool in observational causal inference. Interpretability is paramount in…

Methodology · Statistics 2023-04-05 Marco Morucci , Cynthia Rudin , Alexander Volfovsky

Enabling robots to learn novel visuomotor skills in a data-efficient manner remains an unsolved problem with myriad challenges. A popular paradigm for tackling this problem is through leveraging large unlabeled datasets that have many…

Robotics · Computer Science 2023-05-16 Maximilian Du , Suraj Nair , Dorsa Sadigh , Chelsea Finn

Deep neural networks tend to memorize noisy labels, severely degrading their generalization performance. Although Mixup has demonstrated effectiveness in improving generalization and robustness, existing Mixup-based methods typically…

Machine Learning · Computer Science 2025-09-16 Qiuhao Liu , Ling Li , Yao Lu , Qi Xuan , Zhaowei Zhu , Jiaheng Wei

Machine Learning (ML) methods have seen widespread adoption in seismology in recent years. The ability of these techniques to efficiently infer the statistical properties of large datasets often provides significant improvements over…

Enzyme mining is rapidly evolving as a data-driven strategy to identify biocatalysts with tailored functions from the vast landscape of uncharacterized proteins. The integration of machine learning into these workflows enables…

Biomolecules · Quantitative Biology 2025-07-11 Yanzi Zhang , Felix Moorhoff , Sizhe Qiu , Wenjuan Dong , David Medina-Ortiz , Jing Zhao , Mehdi D. Davari

Machine learning techniques paired with the availability of massive datasets dramatically enhance our ability to explore the chemical compound space by providing fast and accurate predictions of molecular properties. However, learning on…

The discovery and identification of molecules in biological and environmental samples is crucial for advancing biomedical and chemical sciences. Tandem mass spectrometry (MS/MS) is the leading technique for high-throughput elucidation of…

To create state-of-the-art models for many downstream tasks, it has become common practice to fine-tune a pre-trained large vision model. However, it remains an open question of how to best determine which of the many possible model…

Machine Learning · Computer Science 2025-12-08 Simon Guiroy , Mats Richter , Sarath Chandar , Christopher Pal

Deep Metric Learning (DML) methods aim at learning an embedding space in which distances are closely related to the inherent semantic similarity of the inputs. Previous studies have shown that popular benchmark datasets often contain…

Computer Vision and Pattern Recognition · Computer Science 2023-11-02 Oriol Barbany , Xiaofan Lin , Muhammet Bastan , Arnab Dhua

Labeled data are critical to modern machine learning applications, but obtaining labels can be expensive. To mitigate this cost, machine learning methods, such as transfer learning, semi-supervised learning and active learning, aim to be…

Large Language Models (LLMs) have swiftly emerged as vital resources for different applications in the biomedical and healthcare domains; however, these models encounter issues such as generating inaccurate information or hallucinations.…

Computation and Language · Computer Science 2024-05-06 Mingchen Li , Halil Kilicoglu , Hua Xu , Rui Zhang

We introduce a machine-learning (ML) framework for high-throughput benchmarking of diverse representations of chemical systems against datasets of materials and molecules. The guiding principle underlying the benchmarking approach is to…

Machine Learning · Computer Science 2021-12-07 Carl Poelking , Felix A. Faber , Bingqing Cheng