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Related papers: 8 quick tips for data-model integration in ecology

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Several authors have hypothesized that ecological systems are subject to thermodynamic optimization, which, if proven correct, could represent a long sought general principle of organization in ecology. Although there have been recent…

Quantitative Methods · Quantitative Biology 2011-11-09 Santiago R. Doyle , Florencia Carusela , Sebastián Guala , Fernando Momo

Ecology and evolution are inseparable. Motivated by some recent experiments, we have developed models of evolutionary ecology from the perspective of dynamic networks. In these models, in addition to the intra-node dynamics, which…

Populations and Evolution · Quantitative Biology 2009-11-10 Debashish Chowdhury , Dietrich Stauffer

A range of integrated modeling approaches have been developed to enable a holistic representation of business process logic together with all relevant business rules. These approaches address inherent problems with separate documentation of…

Information Retrieval · Computer Science 2025-06-18 Tianwa Chen , Barbara Weber , Graeme Shanks , Gianluca Demartini , Marta Indulska , Shazia Sadiq

With the rise of computers, simulation models have emerged beside the more traditional statistical and mathematical models as a third pillar for ecological analysis. Broadly speaking, a simulation model is an algorithm, typically…

Populations and Evolution · Quantitative Biology 2018-12-24 Florian Hartig

Complex systems' modeling and simulation are powerful ways to investigate a multitude of natural phenomena providing extended knowledge on their structure and behavior. However, enhanced modeling and simulation require integration of…

Data is a precious resource in today's society, and is generated at an unprecedented and constantly growing pace. The need to store, analyze, and make data promptly available to a multitude of users introduces formidable challenges in…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-08 Alessandro Margara , Gianpaolo Cugola , Nicolò Felicioni , Stefano Cilloni

A Data Ecosystem offers a keystone-player or alliance-driven infrastructure that enables the interaction of different stakeholders and the resolution of interoperability issues among shared data. However, despite years of research in data…

We briefly review some of the scientific challenges and epistemological issues related to climate science. We discuss the formulation and testing of theories and numerical models, which, given the presence of unavoidable uncertainties in…

History and Philosophy of Physics · Physics 2022-03-31 Valerio Lucarini

Many current challenges involve understanding the complex dynamical interplay between the constituents of systems. Typically, the number of such constituents is high, but only limited data sources on them are available. Conventional…

Populations and Evolution · Quantitative Biology 2021-12-17 Jana C. Massing , Thilo Gross

1.A goal of many research programs in biology is to extract meaningful insights from large, complex data sets. Researchers in Ecology, Evolution and Behavior (EEB) often grapple with long-term, observational data sets from which they…

Quantitative Methods · Quantitative Biology 2020-10-16 Zachary M. Laubach , Eleanor J. Murray , Kim L. Hoke , Rebecca J. Safran , Wei Perng

This paper presents a multifarious examination of natural resources and environmental scientists' adventures navigating the policy change towards open access and cultural shift in data management, sharing, and reuse. Situated in the…

Digital Libraries · Computer Science 2018-03-06 Yi Shen

Nowadays, we have the emergence and abundance of many different data repositories and archival systems for scientific data discovery, use, and analysis. With the burgeoning data sharing platforms available, this study addresses how natural…

Digital Libraries · Computer Science 2018-03-06 Yi Shen

In the past few decades, the life sciences have experienced an unprecedented accumulation of data, ranging from genomic sequences and proteomic profiles to heavy-content imaging, clinical assays, and commercial biological products for…

Databases · Computer Science 2025-09-22 Rosalia Moreddu

The application of process-based and data-driven hydrological models is crucial in modern hydrological research, especially for predicting key water cycle variables such as runoff, evapotranspiration (ET), and soil moisture. These models…

Geophysics · Physics 2024-08-14 Haiyang Shi

Although networks provide a powerful approach to study a large variety of ecological systems, their formulation does not typically account for multiple interaction types, interactions that vary in space and time, and interconnected systems…

Quantitative Methods · Quantitative Biology 2017-03-27 Shai Pilosof , Mason A. Porter , Mercedes Pascual , Sonia Kéfi

New technologies have enabled the investigation of biology and human health at an unprecedented scale and in multiple dimensions. These dimensions include a myriad of properties describing genome, epigenome, transcriptome, microbiome,…

Quantitative Methods · Quantitative Biology 2018-10-22 Marinka Zitnik , Francis Nguyen , Bo Wang , Jure Leskovec , Anna Goldenberg , Michael M. Hoffman

Scientists investigate the dynamics of complex systems with quantitative models, employing them to synthesize knowledge, to explain observations, and to forecast future system behavior. Complete specification of systems is impossible, so…

Quantitative Methods · Quantitative Biology 2007-05-23 S. R. Borrett , W. Bridewell , P. Langely , K. R. Arrigo

Advances in technology and computing hardware are enabling scientists from all areas of science to produce massive amounts of data using large-scale simulations or observational facilities. In this era of data deluge, effective coordination…

Databases · Computer Science 2015-03-31 Spyros Blanas , Surendra Byna

Mathematical models are increasingly a part of microbiological research. Here, we share our perspective on how modeling advances the discipline by: (i) enforcing logical consistency, (ii) enabling quantitative prediction, (iii) extracting…

Other Quantitative Biology · Quantitative Biology 2026-04-22 Jamie A. Lopez , Amir Erez

Sustainability has over the past two decades emerged as a key concern in human-computer interaction, with a much critiqued focus on quantification and eco-feedback. This approach fits within a modernist framing of sustainability, treating…

Human-Computer Interaction · Computer Science 2023-04-28 Aksel Biørn-Hansen