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Coupling diffusion process of signaling molecules with nonlinear interactions of intracellular processes and cellular growth/transformation leads to a system of reaction-diffusion equations coupled with ordinary differential equations…

Analysis of PDEs · Mathematics 2013-11-08 Anna Marciniak-Czochra , Madoka Nakayama , Izumi Takagi

Reaction-diffusion (Turing) systems are fundamental to the formation of spatial patterns in nature and engineering. These systems are governed by a set of non-linear partial differential equations containing parameters that determine the…

Machine Learning · Computer Science 2022-11-28 Jordon Kho , Winston Koh , Jian Cheng Wong , Pao-Hsiung Chiu , Chin Chun Ooi

We investigate Turing pattern formation in a stochastic and spatially discretized version of a reaction diffusion advection (RDA) equation, which was previously introduced to model synaptogenesis in \textit{C. elegans}. The model describes…

Statistical Mechanics · Physics 2020-09-15 Hyunjoong Kim , Paul C. Bressloff

This paper is concerned with analysis of coupled fractional reaction-diffusion equations. It provides analytical comparison for the fractional and regular reaction-diffusion systems. As an example, the reaction-diffusion model with cubic…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Vasyl Gafiychuk , Bohdan Datsko , Vitaliy Meleshko

Although the pattern formation on polymer gels has been considered as a result of the mechanical instability due to the volume phase transition, we found a macroscopic surface pattern formation not caused by the mechanical instability. It…

Pattern Formation and Solitons · Physics 2007-05-23 Hiroaki Katsuragi

This paper is concerned with stochastic reaction-diffusion kinetics governed by the reaction-diffusion master equation. Specifically, the primary goal of this paper is to provide a mechanistic basis of Turing pattern formation that is…

Quantitative Methods · Quantitative Biology 2015-04-23 Yutaka Hori , Shinji Hara

A class of systems is considered, where immobile species associated to distinct patches, the nodes of a network, interact both locally and at a long-range, as specified by an (interaction) adjacency matrix. Non local interactions are…

Pattern Formation and Solitons · Physics 2020-06-30 Giulia Cencetti , Federico Battiston , Timoteo Carletti , Duccio Fanelli

Divergence and vorticity damping, which operate upon horizontal divergence and relative vorticity, are explicit diffusion mechanisms used in dynamical cores to ensure stability. To avoid numerical blow-up from excessively strong diffusion,…

Numerical Analysis · Mathematics 2026-02-19 Timothy C. Andrews , Christiane Jablonowski

The linearization principle states that the stability (or instability) of solutions to a suitable linearization of a nonlinear problem implies the stability (or instability) of solutions to the original nonlinear problem. In this work, we…

Analysis of PDEs · Mathematics 2025-07-04 Sofwah Ahmad , Szymon Cygan , Grzegorz Karch

Turing instability in activator-inhibitor systems provides a paradigm of nonequilibrium pattern formation; it has been extensively investigated for biological and chemical processes. Turing pattern formation should furthermore be possible…

Adaptation and Self-Organizing Systems · Physics 2010-05-13 Hiroya Nakao , Alexander S. Mikhailov

In this work an activator-depleted reaction-diffusion system is investigated on polar coordinates with the aim of exploring the relationship and the corresponding influence of domain size on the types of possible diffusion-driven…

Dynamical Systems · Mathematics 2018-01-11 Wakil Sarfaraz , Anotida Madzvamuse

We study diffusion-controlled processes in nonequilibrium steady states, where standard rate theory assumptions break down. Using transition path theory, we generalize the relations between reactive probability fluxes and measures of the…

Chemical Physics · Physics 2025-06-02 Seokjin Moon , David T. Limmer

Turing patterns emerge from a spatially uniform state following a linear instability driven by diffusion. Features of the eventual pattern (stabilized by non-linearities) are already present in the initial unstable modes. On a uniform flat…

Soft Condensed Matter · Physics 2019-01-31 John R. Frank , Jemal Guven , Mehran Kardar , Henry Shackleton

We hereby develop the theory of Turing instability for reaction-diffusion systems defined on complex networks assuming finite propagation. Extending to networked systems the framework introduced by Cattaneo in the 40's, we remove the…

Pattern Formation and Solitons · Physics 2025-10-22 Timoteo Carletti , Riccardo Muolo

We analyse a dynamic control problem for scalar reaction-diffusion equations, focusing on the emulation of pattern formation through the selection of appropriate active controls. While boundary controls alone prove inadequate for…

Optimization and Control · Mathematics 2024-07-26 Domènec Ruiz-Balet , Enrique Zuazua

A class of hyperbolic reaction--diffusion models with cross-diffusion is derived within the context of Extended Thermodynamics. Linear stability analysis is performed to study the nature of the equilibrium states against uniform and…

Pattern Formation and Solitons · Physics 2020-06-12 Carmela Currò , Giovanna Valenti

The problem of Turing instabilities for a reaction-diffusion system defined on a complex Cartesian product networks is considered. To this end we operate in the linear regime and expand the time dependent perturbation on a basis formed by…

Statistical Mechanics · Physics 2014-12-23 Malbor Asllani , Daniel M. Busiello , Timoteo Carletti , Duccio Fanelli , Gwendoline Planchon

I show stable, localized, single and multi-spot patterns of three classes - stationary, moving, and rotating - that exist within a limited range of parameter values in the two-dimensional Gray-Scott reaction-diffusion model with ${\sigma} =…

Pattern Formation and Solitons · Physics 2015-01-12 Robert P. Munafo

The universal equations describing collective oscillations of the multidomain patterns of small period in an arbitrary $d$-dimensional reaction-diffusion system of the activator-inhibitor type are asymptotically derived. It is shown that…

patt-sol · Physics 2009-10-30 C. B. Muratov

Understanding how patterns and travelling waves form in chemical and biological reaction-diffusion models is an area which has been widely researched, yet is still experiencing fast development. Surprisingly enough, we still do not have a…

Populations and Evolution · Quantitative Biology 2018-05-24 Andrea Cangiani , Emmanuil H. Georgoulis , Andrew Yu. Morozov , Oliver J. Sutton