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This paper describes a cascading multimodal pipeline for high-resolution biodiversity mapping across Europe, integrating species distribution modeling, biodiversity indicators, and habitat classification. The proposed pipeline first…

Artificial Intelligence · Computer Science 2025-04-08 César Leblanc , Lukas Picek , Benjamin Deneu , Pierre Bonnet , Maximilien Servajean , Rémi Palard , Alexis Joly

Global plant maps of plant traits, such as leaf nitrogen or plant height, are essential for understanding ecosystem processes, including the carbon and energy cycles of the Earth system. However, existing trait maps remain limited by the…

Biodiversity research requires complete and detailed information to study ecosystem dynamics at different scales. Employing data-driven methods like Machine Learning is getting traction in ecology and more specific biodiversity, offering…

Quantitative Methods · Quantitative Biology 2025-10-27 Stylianos Stasinos , Martino Mensio , Elena Lazovik , Athanasios Trantas

Lifemapper (http://www.lifemapper.org) is a predictive electronic atlas of the Earth's biological biodiversity. Using a screensaver version of the GARP genetic algorithm for modeling species distributions, Lifemapper harnesses vast…

Quantitative Methods · Quantitative Biology 2011-11-09 David R. B. Stockwell , James H. Beach , Aimee Stewart , Gregory Vorontsov , David Vieglais , Ricardo Scachetti Pereira

Biogeographical regions (bioregions) reveal how different sets of species are spatially grouped and therefore are important units for conservation, historical biogeography, ecology and evolution. Several methods have been developed to…

Quantitative Methods · Quantitative Biology 2016-12-01 Daniel Edler , Thaís Guedes , Alexander Zizka , Martin Rosvall , Alexandre Antonelli

The difficulty of monitoring biodiversity at fine scales and over large areas limits ecological knowledge and conservation efforts. To fill this gap, Species Distribution Models (SDMs) predict species across space from spatially explicit…

Computer Vision and Pattern Recognition · Computer Science 2024-12-12 Lukas Picek , Christophe Botella , Maximilien Servajean , César Leblanc , Rémi Palard , Théo Larcher , Benjamin Deneu , Diego Marcos , Pierre Bonnet , Alexis Joly

Mapping habitat suitability, based on factors like host availability and environmental suitability, is a common approach to determining which locations are important for the spread of a species. Mapping habitat connectivity takes geographic…

Explaining why the species lives at a particular location is important for understanding ecological systems and conserving biodiversity. However, existing ecological workflows are fragmented and often inaccessible to non-specialists. We…

Computer Vision and Pattern Recognition · Computer Science 2025-09-10 Yutong Zhou , Masahiro Ryo

The difficulty to measure or predict species community composition at fine spatio-temporal resolution and over large spatial scales severely hampers our ability to understand species assemblages and take appropriate conservation measures.…

Many ecological questions center on complex phenomena, such as species interactions, behaviors, phenology, and responses to disturbance, that are inherently difficult to observe and sparsely documented. Community science platforms such as…

Earth observation (EO), aiming at monitoring the state of planet Earth using remote sensing data, is critical for improving our daily lives and living environment. With a growing number of satellites in orbit, an increasing number of…

Computer Vision and Pattern Recognition · Computer Science 2024-04-04 Zhitong Xiong , Fahong Zhang , Yi Wang , Yilei Shi , Xiao Xiang Zhu

Plant traits such as leaf carbon content and leaf mass are essential variables in the study of biodiversity and climate change. However, conventional field sampling cannot feasibly cover trait variation at ecologically meaningful spatial…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Eya Cherif , Arthur Ouaknine , Luke A. Brown , Phuong D. Dao , Kyle R. Kovach , Bing Lu , Daniel Mederer , Hannes Feilhauer , Teja Kattenborn , David Rolnick

Multi-omics data offer unprecedented insights into complex biological systems, yet their high dimensionality, sparsity, and intricate interactions pose significant analytical challenges. Network-based approaches have advanced multi-omics…

Advances in computational chemistry have produced high-dimensional datasets on atmospherically relevant molecules. To aid exploration of such datasets, particularly for the study of atmospheric aerosol formation, we introduce PhiPlot: a…

Human-Computer Interaction · Computer Science 2026-03-13 Matias Loukojärvi , Ananth Mahadevan , Katsiaryna Haitsiukevich , Kai Puolamäki

Monitoring vegetation dynamics is crucial for addressing global environmental challenges like degradation and deforestation, but traditional remote sensing methods are often complex and resource-intensive. To overcome these barriers, we…

Human-Computer Interaction · Computer Science 2025-09-03 Md. Moktader Moula , Israt Jahan Shonom , Azharul Islam , Mohammad Mosharraf Hossain

This paper focuses on a core task in computational sustainability and statistical ecology: species distribution modeling (SDM). In SDM, the occurrence pattern of a species on a landscape is predicted by environmental features based on…

Machine Learning · Computer Science 2021-02-19 Eugene Seo , Rebecca A. Hutchinson , Xiao Fu , Chelsea Li , Tyler A. Hallman , John Kilbride , W. Douglas Robinson

Identifying and understanding the large-scale biodiversity patterns in time and space is vital for conservation and addressing fundamental ecological and evolutionary questions. Network-based methods have proven useful for simplifying and…

Populations and Evolution · Quantitative Biology 2023-07-03 Daniel Edler , Anton Holmgren , Alexis Rojas , Joaquín Calatayud , Martin Rosvall , Alexandre Antonelli

This work presents some characteristics of MoNet, a digital platform for the modeling and visualization of complex systems. Emphasis is on the ideas that allowed the successful progressive development of this modeling platform, which goes…

Software Engineering · Computer Science 2020-09-01 Gerardo L. Febres

BEFANA is a free and open-source software tool for ecological network analysis and visualisation. It is adapted to ecologists' needs and allows them to study the topology and dynamics of ecological networks as well as apply selected machine…

Quantitative Methods · Quantitative Biology 2026-03-12 Martin Marzidovšek , Vid Podpečan , Erminia Conti , Marko Debeljak , Christian Mulder

Biodiversity, the variation within and between species and ecosystems, is essential for human well-being and the equilibrium of the planet. It is critical for the sustainable development of human society and is an important global…

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