Related papers: Subgraph Isomorphism: Prolog vs. Conventional
Symmetry breaking for graphs and other combinatorial objects is notoriously hard. On the one hand, complete symmetry breaks are exponential in size. On the other hand, current, state-of-the-art, partial symmetry breaks are often considered…
We consider the following two algorithmic problems: given a graph $G$ and a subgraph $H\subseteq G$, decide whether $H$ is an isometric or a geodesically convex subgraph of $G$. It is relatively easy to see that the problems can be solved…
Large-scale graphs are widely used to represent object relationships in many real world applications. The occurrence of large-scale graphs presents significant computational challenges to process, analyze, and extract information. Graph…
Graph drawing addresses the problem of finding a layout of a graph that satisfies given aesthetic and understandability objectives. The most important objective in graph drawing is minimization of the number of crossings in the drawing, as…
Locally-biased graph algorithms are algorithms that attempt to find local or small-scale structure in a large data graph. In some cases, this can be accomplished by adding some sort of locality constraint and calling a traditional graph…
In this report, we describe a novel graph invariant for computational graphs (colored directed acylic graphs) and how we used it to generate all distinct computational graphs up to isomorphism for small graphs. The algorithm iteratively…
The graph identification problem consists of discovering the interactions among nodes in a network given their state/feature trajectories. This problem is challenging because the behavior of a node is coupled to all the other nodes by the…
In this paper we study a natural generalization of both {\sc $k$-Path} and {\sc $k$-Tree} problems, namely, the {\sc Subgraph Isomorphism} problem. In the {\sc Subgraph Isomorphism} problem we are given two graphs $F$ and $G$ on $k$ and $n$…
This paper provides an abstract definition of some kinds of logics, called diagrammatic logics, together with a definition of morphisms and of 2-morphisms between diagrammatic logics. The definition of the 2-category of diagrammatic logics…
Graph neural networks (GNNs) and message passing neural networks (MPNNs) have been proven to be expressive for subgraph structures in many applications. Some applications in heterogeneous graphs require explicit edge modeling, such as…
The Weisfeiler-Leman (WL) algorithms form a family of incomplete approaches to the graph isomorphism problem. They recently found various applications in algorithmic group theory and machine learning. In fact, the algorithms form a…
We use the line digraph construction to associate an orthogonal matrix with each graph. From this orthogonal matrix, we derive two further matrices. The spectrum of each of these three matrices is considered as a graph invariant. For the…
We propose a novel variational method for solving the sub-graph isomorphism problem on a gate-based quantum computer. The method relies (1) on a new representation of the adjacency matrices of the underlying graphs, which requires a number…
Comparability graphs are a popular class of graphs. We introduce as the digraph analogue of comparability graphs the class of comparability digraphs. We show that many concepts such as implication classes and the knotting graph for a…
Representing a graph as a vector is a challenging task; ideally, the representation should be easily computable and conducive to efficient comparisons among graphs, tailored to the particular data and analytical task at hand. Unfortunately,…
We present a form of algebraic reasoning for computational objects which are expressed as graphs. Edges describe the flow of data between primitive operations which are represented by vertices. These graphs have an interface made of…
Large language models (LLMs) have demonstrated remarkable success across a wide range of tasks; however, they still encounter challenges in reasoning tasks that require understanding and inferring relationships between distinct pieces of…
The analysis of graphs has become increasingly important to a wide range of applications. Graph analysis presents a number of unique challenges in the areas of (1) software complexity, (2) data complexity, (3) security, (4) mathematical…
When an evolving program is modified to address issues related to thread synchronization, there is a need to confirm the change is correct, i.e., it does not introduce unexpected behavior. However, manually comparing two programs to…
In this paper, we study the graph classification problem from the graph homomorphism perspective. We consider the homomorphisms from $F$ to $G$, where $G$ is a graph of interest (e.g. molecules or social networks) and $F$ belongs to some…