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We propose an 'automatic' approach to analyze the results of the on-the-fly trajectory surface hopping simulation on the multi-channel nonadiabatic photoisomerization dynamics by considering the trajectory similarity and the configuration…

Chemical Physics · Physics 2019-01-30 Xusong Li , Deping Hu , Yu Xie , Zhenggang Lan

Predicting the dynamics of complex systems is crucial for various scientific and engineering applications. The accuracy of predictions depends on the model's ability to capture the intrinsic dynamics. While existing methods capture key…

Computational Engineering, Finance, and Science · Computer Science 2025-06-10 Ruikun Li , Jingwen Cheng , Huandong Wang , Qingmin Liao , Yong Li

Accurate dynamics models are critical for aerial manipulators operating under complex tasks such as payload transport. However, modeling these systems remains fundamentally challenging due to strong quadrotor-manipulator coupling, delayed…

Robotics · Computer Science 2026-05-15 Rishabh Dev Yadav , Samaksh Ujjawal , Sihao Sun , Spandan Roy , Wei Pan

Identifying reaction coordinates(RCs) is an active area of research, given the crucial role RCs play in determining the progress of a chemical reaction. The choice of the reaction coordinate is often based on heuristic knowledge. However,…

Chemical Physics · Physics 2024-01-17 Abhijit Gupta

Molecular dynamics simulations produce data with complex nonlinear dynamics. If the timestep behavior of such a dynamic system can be represented by a linear operator, future states can be inferred directly without expensive simulations.…

Machine Learning · Computer Science 2021-05-27 Willis Hoke , Daniel Shea , Stephen Casey

The current practice of manually processing features for high-dimensional and heterogeneous aviation data is labor-intensive, does not scale well to new problems, and is prone to information loss, affecting the effectiveness and…

Machine Learning · Computer Science 2020-11-10 Liya Wang , Panta Lucic , Keith Campbell , Craig Wanke

Finding collective variables to describe some important coarse-grained information on physical systems, in particular metastable states, remains a key issue in molecular dynamics. Recently, machine learning techniques have been intensively…

Chemical Physics · Physics 2024-03-15 Tony Lelièvre , Thomas Pigeon , Gabriel Stoltz , Wei Zhang

A convolutional autoencoder is trained using a database of airfoil aerodynamic simulations and assessed in terms of overall accuracy and interpretability. The goal is to predict the stall and to investigate the ability of the autoencoder to…

Fluid Dynamics · Physics 2023-02-22 Ettore Saetta , Renato Tognaccini , Gianluca Iaccarino

Macromolecular and biomolecular folding landscapes typically contain high free energy barriers that impede efficient sampling of configurational space by standard molecular dynamics simulation. Biased sampling can artificially drive the…

Biological Physics · Physics 2018-11-01 Wei Chen , Andrew L Ferguson

Kernel-based methods exhibit well-documented performance in various nonlinear learning tasks. Most of them rely on a preselected kernel, whose prudent choice presumes task-specific prior information. Especially when the latter is not…

Machine Learning · Statistics 2018-12-31 Yanning Shen , Tianyi Chen , Georgios B. Giannakis

Mixed-quantum-classical molecular dynamics simulation implies an effective measurement on the electronic states owing to continuously tracking the atomic forces.Based on this insight, we propose a quantum trajectory mean-field approach for…

Chemical Physics · Physics 2014-08-08 Wei Feng , Luting Xu , Xin-Qi Li , Weihai Fang , YiJing Yan

A new self-learning algorithm for accelerated dynamics, reconnaissance metadynamics, is proposed that is able to work with a very large number of collective coordinates. Acceleration of the dynamics is achieved by constructing a bias…

Computational Physics · Physics 2010-10-15 Gareth A. Tribello , Michele Ceriotti , Michele Parrinello

Atomic-scale modeling has advanced rapidly through integration of machine learning, yet a key bottleneck remains. Even with an accurate potential energy surface and a clear target material, we still lack a practical atomistic dynamics…

Materials Science · Physics 2026-05-18 Wonseok Jeong , Francesca Tavazza , Brian DeCost

Non-radiative decay in photoexcited molecular systems is driven by nuclear motion toward conical intersections (CIs), where electronic states become degenerate and nonadiabatic transitions occur. Identifying the nuclear degrees of freedom…

Chemical Physics · Physics 2026-05-12 Debarshi Banerjee , Gonzalo Díaz Mirón , Alex Rodriguez , Ali Hassanali

The coupling of electronic and nuclear motion in polyatomic molecules is at the heart of attochemistry. The molecular properties, transient structures and reaction mechanism of these many-body quantum objects are defined on the level of…

Chemical Physics · Physics 2024-03-12 David Schwickert , Andreas Przystawik , Dian Diaman , Detlef Kip , Jon P. Marangos , Tim Laarmann

Spatial L{\'{e}}vy-like flights are introduced as a way in the absorbing phase transitions to produce non-local interactions. We utilize the autoencoder, an unsupervised learning method, to predict the critical points for $(1+1)$-d directed…

Statistical Mechanics · Physics 2024-10-24 Yanyang Wang , Yuxiang Yang , Wei Li

Analyzing nonadiabatic molecular dynamics trajectories traditionally heavily relies on expert intuition and visual pattern recognition, a process that is difficult to formalize. We present VisU, a vision-driven framework that leverages the…

Chemical Physics · Physics 2026-01-06 Yifei Zhu , Jiahui Zhang , Binni Huang , Zhenggang Lan

We introduce a novel computational framework for excited-states molecular quantum dynamics simulations driven by quantum computing-based electronic-structure calculations. This framework leverages the fewest-switches surface-hopping method…

Quantum Physics · Physics 2024-02-26 Anthony Gandon , Alberto Baiardi , Pauline Ollitrault , Ivano Tavernelli

We present a new adaptive resolution technique for efficient particle-based multiscale molecular dynamics (MD) simulations. The presented approach is tailor-made for molecular systems where atomistic resolution is required only in spatially…

Soft Condensed Matter · Physics 2007-05-23 Matej Praprotnik , Luigi Delle Site , Kurt Kremer

Nonadiabatic molecular dynamics is a key technique for investigating a broad range of photochemical and photophysical processes. Among the established approaches, surface hopping schemes are widely used and can be easily integrated with…

Chemical Physics · Physics 2025-12-23 Jakub Martinka , Mikołaj Martyka , Biman Medhi , Jiří Pittner , Pavlo O. Dral
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