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In this paper we review some recent results that shed light on a fundamental question in molecular systematics: how much phylogenetic `signal' can we expect from characters that have evolved under some Markov process? There are many sides…

Populations and Evolution · Quantitative Biology 2011-11-10 Elchanan Mossel , Mike Steel

State-of-the-art language models are autoregressive and operate on subword units known as tokens. Specifically, one must encode the conditioning string into a list of tokens before passing to the language models for next-token prediction.…

Computation and Language · Computer Science 2024-07-09 Buu Phan , Marton Havasi , Matthew Muckley , Karen Ullrich

We describe an alternative method (to compression) that combines several theoretical and experimental results to numerically approximate the algorithmic (Kolmogorov-Chaitin) complexity of all $\sum_{n=1}^82^n$ bit strings up to 8 bits long,…

Information Theory · Computer Science 2015-03-18 Jean-Paul Delahaye , Hector Zenil

Within psychology, neuroscience and artificial intelligence, there has been increasing interest in the proposal that the brain builds probabilistic models of sensory and linguistic input: that is, to infer a probabilistic model from a…

Machine Learning · Computer Science 2017-08-08 Paul M. B. Vitanyi , Nick Chater

Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. Sampled string…

Data Structures and Algorithms · Computer Science 2019-08-19 Simone Faro , Arianna Pavone , Francesco Pio Marino

It is shown that under reasonable assumptions a Drake-style equation can be obtained for the probability that our universe is the result of a deliberate simulation. Evaluating loose bounds for certain terms in the equation shows that the…

Popular Physics · Physics 2021-03-23 Alexandre Bibeau-Delisle , Gilles Brassard

In this paper, we present a novel iterative Monte Carlo method for approximating the stationary probability of a single state of a positive recurrent Markov chain. We utilize the characterization that the stationary probability of a state…

Data Structures and Algorithms · Computer Science 2015-12-11 Christina E. Lee , Asuman Ozdaglar , Devavrat Shah

In many branches of engineering, Banach contraction mapping theorem is employed to establish the convergence of certain deterministic algorithms. Randomized versions of these algorithms have been developed that have proved useful in…

Probability · Mathematics 2023-09-25 Abhishek Gupta , Rahul Jain , Peter Glynn

We show a methodology for the computation of the probability of deadline miss for a periodic real-time task scheduled by a resource reservation algorithm. We propose a modelling technique for the system that reduces the computation of such…

Performance · Computer Science 2016-04-28 Luigi Palopoli , Daniele Fontanelli , Luca Abeni , Bernardo Villalba Frías

We consider random walks on the set of all words over a finite alphabet such that in each step only the last two letters of the current word may be modified and only one letter may be adjoined or deleted. We assume that the transition…

Probability · Mathematics 2008-07-16 Lorenz A. Gilch

Random walks (or Markov chains) are models extensively used in theoretical computer science. Several tools, including analysis of quantities such as hitting and mixing times, are helpful for devising randomized algorithms. A notable example…

Quantum Physics · Physics 2023-07-12 Lorenzo Laneve , Francesco Tacchino , Ivano Tavernelli

The main theme of this paper is the enumeration of the occurrence of a pattern in words and permutations. We mainly focus on asymptotic properties of the sequence $f_r^v(k,n),$ the number of $n$-array $k$-ary words that contain a given…

Combinatorics · Mathematics 2019-05-15 Toufik Mansour , Reza Rastegar , Alexander Roitershtein

This paper is a variation on the uniform spanning tree theme. We use random spanning forests to solve the following problem: for a Markov process on a finite set of size $n$, find a probability law on the subsets of any given size $m \leq…

Probability · Mathematics 2016-02-01 Luca Avena , Alexandre Gaudillière

Semi-Markov processes are Markovian processes in which the firing time of the transitions is modelled by probabilistic distributions over positive reals interpreted as the probability of firing a transition at a certain moment in time. In…

Formal Languages and Automata Theory · Computer Science 2017-12-04 Mathias Ruggaard Pedersen , Nathanaël Fijalkow , Giorgio Bacci , Kim Guldstrand Larsen , Radu Mardare

We examine the reset threshold of randomly generated deterministic automata. We present a simple proof that an automaton with a random mapping and two random permutation letters has a reset threshold of $\mathcal{O}\big( \sqrt{n \log^3 n}…

Combinatorics · Mathematics 2023-12-05 Balázs Gerencsér , Zsombor Várkonyi

In the present paper, we investigate the relationship between hitting times and hitting probabilities in discrete-time imprecise Markov chains (IMCs). We define lower and upper hitting times and probabilities for IMCs whose set of…

Probability · Mathematics 2026-03-18 Marco Sangalli , Erik Quaeghebeur , Thomas Krak

One of the most important ways to experience communication and interact with the systems is by handling the prediction of the most likely words to happen after typing letters or words. It is helpful for people with disabilities due to…

Neural and Evolutionary Computing · Computer Science 2022-01-27 Hozan K. Hamarashid , Soran A. Saeed , Tarik A. Rashid

In most sampling algorithms, including Hamiltonian Monte Carlo, transition rates between states correspond to the probability of making a transition in a single time step, and are constrained to be less than or equal to 1. We derive a…

Machine Learning · Statistics 2015-10-13 Andrew B. Berger , Mayur Mudigonda , Michael R. DeWeese , Jascha Sohl-Dickstein

While one-dimensional Markov processes are well understood, going to higher dimensions there are only a few analytically solved Ising-like models, in practice requiring to use relatively costly, uncontrollable and inaccurate Monte-Carlo…

Information Theory · Computer Science 2021-04-20 Jarek Duda

Optimization techniques, used to get the optimal solution in search spaces, have not solved the time-consuming problem. The objective of this study is to tackle the sequential processing problem in Monkey Algorithm and simulating the…

Neural and Evolutionary Computing · Computer Science 2019-10-15 Moustafa Zein , Aboul Ella Hassanien , Ammar Adl , Adam Slowik
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