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Graph neural networks (GNNs) are often used for the task of link prediction: predicting missing binary facts in knowledge graphs (KGs). To address the lack of explainability of GNNs on KGs, recent works extract Datalog rules from GNNs with…

Machine Learning · Computer Science 2025-08-21 Matthew Morris , David J. Tena Cucala , Bernardo Cuenca Grau

The expressivity of Graph Neural Networks (GNNs) is dependent on the aggregation functions they employ. Theoretical works have pointed towards Sum aggregation GNNs subsuming every other GNNs, while certain practical works have observed a…

Machine Learning · Computer Science 2023-05-22 Eran Rosenbluth , Jan Toenshoff , Martin Grohe

Graph neural networks (GNNs) are frequently used to predict missing facts in knowledge graphs (KGs). Motivated by the lack of explainability for the outputs of these models, recent work has aimed to explain their predictions using Datalog,…

Machine Learning · Computer Science 2024-08-21 Matthew Morris , David J. Tena Cucala , Bernardo Cuenca Grau , Ian Horrocks

We study the expressive power of graph neural networks (GNNs) with mean as the aggregation function, with the following results. In the non-uniform setting, such GNNs have exactly the same expressive power as ratio modal logic, which has…

Artificial Intelligence · Computer Science 2025-12-22 Moritz Schönherr , Carsten Lutz

Graph neural networks (GNNs) have demonstrated a significant boost in prediction performance on graph data. At the same time, the predictions made by these models are often hard to interpret. In that regard, many efforts have been made to…

Machine Learning · Computer Science 2023-05-24 Yiqiao Li , Jianlong Zhou , Sunny Verma , Fang Chen

Effectively combining logic reasoning and probabilistic inference has been a long-standing goal of machine learning: the former has the ability to generalize with small training data, while the latter provides a principled framework for…

Machine Learning · Computer Science 2019-09-24 Yuyu Zhang , Xinshi Chen , Yuan Yang , Arun Ramamurthy , Bo Li , Yuan Qi , Le Song

Graphs neural networks (GNNs) learn node features by aggregating and combining neighbor information, which have achieved promising performance on many graph tasks. However, GNNs are mostly treated as black-boxes and lack human intelligible…

Machine Learning · Computer Science 2020-06-05 Hao Yuan , Jiliang Tang , Xia Hu , Shuiwang Ji

Graph neural networks (GNNs) can effectively model structural information of graphs, making them widely used in knowledge graph (KG) reasoning. However, existing studies on the expressive power of GNNs mainly focuses on simple…

Artificial Intelligence · Computer Science 2026-02-02 Han Yu , Xiaojuan Zhao , Aiping Li , Kai Chen , Ziniu Liu , Zhichao Peng

Graph neural networks (GNNs) have achieved great success in many graph learning tasks. The main aspect powering existing GNNs is the multi-layer network architecture to learn the nonlinear graph representations for the specific learning…

Machine Learning · Computer Science 2022-02-21 Beibei Wang , Bo Jiang

Graph neural networks (GNNs) are powerful graph-based deep-learning models that have gained significant attention and demonstrated remarkable performance in various domains, including natural language processing, drug discovery, and…

Machine Learning · Computer Science 2023-06-06 Jaykumar Kakkad , Jaspal Jannu , Kartik Sharma , Charu Aggarwal , Sourav Medya

Graphical models capture relations between entities in a wide range of applications including social networks, biology, and natural language processing, among others. Graph neural networks (GNN) are neural models that operate over graphs,…

Machine Learning · Computer Science 2024-02-08 Xu Zheng , Farhad Shirani , Tianchun Wang , Shouwei Gao , Wenqian Dong , Wei Cheng , Dongsheng Luo

Massive deployment of Graph Neural Networks (GNNs) in high-stake applications generates a strong demand for explanations that are robust to noise and align well with human intuition. Most existing methods generate explanations by…

Machine Learning · Computer Science 2022-07-14 Mohit Bajaj , Lingyang Chu , Zi Yu Xue , Jian Pei , Lanjun Wang , Peter Cho-Ho Lam , Yong Zhang

Graph Neural Networks (GNNs) achieve state-of-the-art performance in various graph-related tasks. However, the black-box nature often limits their interpretability and trustworthiness. Numerous explainability methods have been proposed to…

Machine Learning · Computer Science 2023-11-13 Jialin Chen , Kenza Amara , Junchi Yu , Rex Ying

Although there has been significant interest in applying machine learning techniques to structured data, the expressivity (i.e., a description of what can be learned) of such techniques is still poorly understood. In this paper, we study…

Artificial Intelligence · Computer Science 2023-06-16 David Tena Cucala , Bernardo Cuenca Grau , Boris Motik , Egor V. Kostylev

Graph neural networks (GNNs) manifest pathologies including over-smoothing and limited discriminating power as a result of suboptimally expressive aggregating mechanisms. We herein present a unifying framework for stochastic aggregation…

Machine Learning · Statistics 2021-03-01 Yuanqing Wang , Theofanis Karaletsos

Graph Neural Networks (GNNs) are a powerful tool for machine learning on graphs.GNNs combine node feature information with the graph structure by recursively passing neural messages along edges of the input graph. However, incorporating…

Machine Learning · Computer Science 2019-11-15 Rex Ying , Dylan Bourgeois , Jiaxuan You , Marinka Zitnik , Jure Leskovec

We study the generalization capabilities of Message Passing Neural Networks (MPNNs), a prevalent class of Graph Neural Networks (GNN). We derive generalization bounds specifically for MPNNs with normalized sum aggregation and mean…

Machine Learning · Computer Science 2024-04-05 Sohir Maskey , Gitta Kutyniok , Ron Levie

Graph neural networks (GNNs) are deep learning architectures for machine learning problems on graphs. It has recently been shown that the expressiveness of GNNs can be characterised precisely by the combinatorial Weisfeiler-Leman algorithms…

Machine Learning · Computer Science 2022-01-11 Martin Grohe

The counting power of Message Passing Neural Networks (MPNN) has been the subject of many recent papers, showing that they can express logic that involves counting up to a threshold or more generally satisfy a linear arithmetic constraint.…

Machine Learning · Computer Science 2026-05-12 Marco Sälzer , Pascal Bergsträßer , Anthony W. Lin

Graph neural networks (GNNs) are the predominant approach for graph-based machine learning. While neural networks have shown great performance at learning useful representations, they are often criticized for their limited high-level…

Machine Learning · Computer Science 2024-07-09 Markus Zopf , Francesco Alesiani
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