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Large language models (LLMs) have shown strong ability in generating rich representations across domains such as natural language processing and generation, computer vision, and multimodal learning. However, their application in biomedical…

Genomics · Quantitative Biology 2025-09-30 Luxuan Zhang , Douglas Jiang , Qinglong Wang , Haoqi Sun , Feng Tian

Spatial transcriptomics is an emerging technology that aligns histopathology images with spatially resolved gene expression profiling. It holds the potential for understanding many diseases but faces significant bottlenecks such as…

Computer Vision and Pattern Recognition · Computer Science 2024-01-12 Gabriel Mejia , Paula Cárdenas , Daniela Ruiz , Angela Castillo , Pablo Arbeláez

Semantic communication is expected to be one of the cores of next-generation AI-based communications. One of the possibilities offered by semantic communication is the capability to regenerate, at the destination side, images or videos…

Artificial Intelligence · Computer Science 2026-05-18 Eleonora Grassucci , Sergio Barbarossa , Danilo Comminiello

Single-cell spatial transcriptomics (ST) offers a unique approach to measuring gene expression profiles and spatial cell locations simultaneously. However, most existing ST methods assume that cells in closer spatial proximity exhibit more…

Genomics · Quantitative Biology 2025-06-10 Xiongtao Xiao , Xiaofeng Chen , Feiyan Jiang , Songming Zhang , Wenming Cao , Cheng Tan , Zhangyang Gao , Zhongshan Li

Black box deep learning models trained on genomic sequences excel at predicting the outcomes of different gene regulatory mechanisms. Therefore, interpreting these models may provide novel insights into the underlying biology, supporting…

Machine Learning · Computer Science 2024-07-18 Pedro Barbosa , Rosina Savisaar , Alcides Fonseca

Sensing and communication are fundamental enablers of next-generation networks. While communication technologies have advanced significantly, sensing remains limited to conventional parameter estimation and is far from fully explored.…

Signal Processing · Electrical Eng. & Systems 2026-04-01 Xiaoqi Zhang , J. Andrew Zhang , Chang Liu , Weijie Yuan , Geoffrey Ye Li , Moeness G. Amin

Spatial transcriptomic (ST) clustering employs spatial and transcription information to group spots spatially coherent and transcriptionally similar together into the same spatial domain. Graph convolution network (GCN) and graph attention…

Quantitative Methods · Quantitative Biology 2023-10-24 Chen Zhang , Junhui Gao , Lingxin Kong , Guangshuo cao , Xiangyu Guo , Wei Liu

Point cloud few-shot semantic segmentation (PC-FSS) aims to segment targets of novel categories in a given query point cloud with only a few annotated support samples. The current top-performing prototypical learning methods employ…

Computer Vision and Pattern Recognition · Computer Science 2024-08-27 Zhaoyang Li , Yuan Wang , Wangkai Li , Rui Sun , Tianzhu Zhang

We examine the speech modeling potential of generative spoken language modeling (GSLM), which involves using learned symbols derived from data rather than phonemes for speech analysis and synthesis. Since GSLM facilitates textless spoken…

Computation and Language · Computer Science 2023-06-02 Joonyong Park , Shinnosuke Takamichi , Tomohiko Nakamura , Kentaro Seki , Detai Xin , Hiroshi Saruwatari

In text recognition, self-supervised pre-training emerges as a good solution to reduce dependence on expansive annotated real data. Previous studies primarily focus on local visual representation by leveraging mask image modeling or…

Computer Vision and Pattern Recognition · Computer Science 2024-05-14 Zuan Gao , Yuxin Wang , Yadong Qu , Boqiang Zhang , Zixiao Wang , Jianjun Xu , Hongtao Xie

Spatial transcriptomics (ST) is essential for understanding diseases and developing novel treatments. It measures gene expression of each fine-grained area (i.e., different windows) in the tissue slide with low throughput. This paper…

Computer Vision and Pattern Recognition · Computer Science 2022-11-01 Yan Yang , Md Zakir Hossain , Eric A Stone , Shafin Rahman

In this paper, we propose to employ semantic segmentation to improve person-related attribute prediction. The core idea lies in the fact that the probability of an attribute to appear in an image is far from being uniform in the spatial…

Computer Vision and Pattern Recognition · Computer Science 2019-11-27 Mahdi M. Kalayeh , Mubarak Shah

While deep neural networks have shown impressive results in automatic speaker recognition and related tasks, it is dissatisfactory how little is understood about what exactly is responsible for these results. Part of the success has been…

Sound · Computer Science 2024-07-10 Daniel Neururer , Volker Dellwo , Thilo Stadelmann

Language models such as RNN, LSTM or other variants have been widely used as generative models in natural language processing. In last few years, taking source code as natural languages, parsing source code into a token sequence and using a…

Software Engineering · Computer Science 2019-10-28 Yixiao Yang

Spatial Transcriptomics (ST) technologies provide biologists with rich insights into single-cell biology by preserving spatial context of cells. Building foundational models for ST can significantly enhance the analysis of vast and complex…

Genomics · Quantitative Biology 2025-07-24 Suyuan Zhao , Yizhen Luo , Ganbo Yang , Yan Zhong , Hao Zhou , Zaiqing Nie

Dialogue state tracking (DST) is an essential sub-task for task-oriented dialogue systems. Recent work has focused on deep neural models for DST. However, the neural models require a large dataset for training. Furthermore, applying them to…

Computation and Language · Computer Science 2022-10-06 Hyunmin Jeon , Gary Geunbae Lee

Single-cell RNA sequencing (scRNA-seq) offers detailed insights into cellular heterogeneity. Recent advancements leverage single-cell large language models (scLLMs) for effective representation learning. These models focus exclusively on…

Machine Learning · Computer Science 2025-06-05 Yaorui Shi , Jiaqi Yang , Changhao Nai , Sihang Li , Junfeng Fang , Xiang Wang , Zhiyuan Liu , Yang Zhang

Large Audio-Language Models (LALMs) have demonstrated remarkable performance in end-to-end speaker diarization and recognition. However, their speaker discriminability remains limited due to the scarcity of large-scale conversational data…

Automated semantic segmentation of cell nuclei in microscopic images is crucial for disease diagnosis and tissue microenvironment analysis. Nonetheless, this task presents challenges due to the complexity and heterogeneity of cells. While…

Image and Video Processing · Electrical Eng. & Systems 2023-08-10 Zhuchen Shao , Sourya Sengupta , Hua Li , Mark A. Anastasio

Few-shot segmentation (FSS) for remote sensing (RS) imagery leverages supporting information from limited annotated samples to achieve query segmentation of novel classes. Previous efforts are dedicated to mining segmentation-guiding visual…

Computer Vision and Pattern Recognition · Computer Science 2024-05-24 Yuyu Jia , Wei Huang , Junyu Gao , Qi Wang , Qiang Li