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Advances in deep learning have opened an era of abundant and accurate predicted protein structures; however, similar progress in protein ensembles has remained elusive. This review highlights several recent research directions towards…

Biomolecules · Quantitative Biology 2025-09-23 Bowen Jing , Bonnie Berger , Tommi Jaakkola

During language model decoding, it is known that using higher temperature sampling gives more creative responses, while lower temperatures are more factually accurate. However, such models are commonly applied to general instruction…

Computation and Language · Computer Science 2024-11-15 Shehzaad Dhuliawala , Ilia Kulikov , Ping Yu , Asli Celikyilmaz , Jason Weston , Sainbayar Sukhbaatar , Jack Lanchantin

To enhance controllability in text-to-image generation, ControlNet introduces image-based control signals, while ControlNet++ improves pixel-level cycle consistency between generated images and the input control signal. To avoid the…

Computer Vision and Pattern Recognition · Computer Science 2025-11-10 Zonglin Lyu , Ming Li , Xinxin Liu , Chen Chen

Preference optimization has made significant progress recently, with numerous methods developed to align language models with human preferences. This paper introduces $f$-divergence Preference Optimization ($f$-PO), a novel framework that…

Computation and Language · Computer Science 2025-02-18 Jiaqi Han , Mingjian Jiang , Yuxuan Song , Stefano Ermon , Minkai Xu

Profile Guided Optimization (PGO) uses runtime profiling to direct compiler optimization decisions, effectively combining static analysis with actual execution behavior to enhance performance. Runtime profiles, collected through…

Performance · Computer Science 2025-07-23 Bingxin Liu , Yinghui Huang , Jianhua Gao , Jianjun Shi , Yongpeng Liu , Yipin Sun , Weixing Ji

Generative AI can now synthesize strikingly realistic images from text, yet output quality remains highly sensitive to how prompts are phrased. Direct Preference Optimization (DPO) offers a lightweight, off-policy alternative to RL for…

Computation and Language · Computer Science 2025-07-30 Anas Mohamed , Azal Ahmad Khan , Xinran Wang , Ahmad Faraz Khan , Shuwen Ge , Saman Bahzad Khan , Ayaan Ahmad , Ali Anwar

Group Relative Policy Optimization (GRPO) is a powerful technique for aligning generative models, but its effectiveness is bottlenecked by the conflict between large group sizes and prohibitive computational costs. In this work, we…

Computer Vision and Pattern Recognition · Computer Science 2025-12-18 Shiran Ge , Chenyi Huang , Yuang Ai , Qihang Fan , Huaibo Huang , Ran He

Exploration in reinforcement learning remains a critical challenge, as naive entropy maximization often results in high variance and inefficient policy updates. We introduce \textbf{PrefPoE}, a novel \textit{Preference-Product-of-Experts}…

Machine Learning · Computer Science 2025-11-12 Zhihao Lin , Lin Wu , Zhen Tian , Jianglin Lan

Many real-world black-box optimization problems have multiple conflicting objectives. Rather than attempting to approximate the entire set of Pareto-optimal solutions, interactive preference learning allows to focus the search on the most…

Machine Learning · Computer Science 2026-01-15 Hanyang Wang , Juergen Branke , Matthias Poloczek

Direct Preference Optimization (DPO) simplifies reinforcement learning from human feedback (RLHF) for large language models (LLMs) by directly optimizing human preferences without an explicit reward model. We find that during DPO training,…

Computation and Language · Computer Science 2026-01-01 Junshu Pan , Wei Shen , Shulin Huang , Qiji Zhou , Yue Zhang

Advancing AI systems in scientific domains like physics, materials science, and engineering calls for reasoning over complex, multi-physics phenomena while respecting governing principles. Although Large Language Models (LLMs) and existing…

Artificial Intelligence · Computer Science 2025-08-27 Nitin Nagesh Kulkarni , Bryson Wilcox , Max Sawa , Jason Thom

Preferential Bayesian Optimization (PBO) aims to find a decision-maker's most preferred solution in as few pairwise comparisons as possible. Existing approaches rely on Gaussian Process (GP) surrogates, which provide strong performance but…

Machine Learning · Computer Science 2026-05-11 Nick Leenders , Thomas Quadt , Boris Cule , Roy Lindelauf , Herman Monsuur , Joost van Oijen , Mark Voskuijl

Automatic prompt optimization (APO) hinges on the quality of its evaluation signal, yet scoring every prompt candidate on the full training set is prohibitively expensive. Existing methods either fix a single evaluation subset before…

Artificial Intelligence · Computer Science 2026-04-14 Xiaoyu Ma , Yiwen Li , Haoyue Liu , Zhichao Wang , Ye Chen , Yongxin Guo , Xiaoying Tang

While reinforcement learning methods such as Group Relative Preference Optimization (GRPO) have significantly enhanced Large Language Models, adapting them to diffusion models remains challenging. In particular, GRPO demands a stochastic…

Machine Learning · Computer Science 2025-10-10 Yihong Luo , Tianyang Hu , Jing Tang

Sample efficiency is a fundamental challenge in de novo molecular design. Ideally, molecular generative models should learn to satisfy a desired objective under minimal oracle evaluations (computational prediction or wet-lab experiment).…

Biomolecules · Quantitative Biology 2023-05-26 Jeff Guo , Philippe Schwaller

Normative theories allow one to elicit key parts of a ML algorithm from first principles, which is crucial at a time of championed scrutiny for ML work. Direct Preference Optimization (DPO) cleverly bypasses reward modeling by making an…

Machine Learning · Computer Science 2026-02-05 Wenxuan Zhou , Shujian Zhang , Brice Magdalou , John Lambert , Ehsan Amid , Richard Nock , Andrew Hard

Direct Preference Optimization (DPO) has become a popular approach for aligning language models using pairwise preferences. However, in practical post-training pipelines, on-policy generation typically yields multiple candidate responses…

Machine Learning · Computer Science 2025-06-23 Taneesh Gupta , Rahul Madhavan , Xuchao Zhang , Nagarajan Natarajan , Chetan Bansal , Saravan Rajmohan

Direct Preference Optimization (DPO) has been proposed as a promising alternative to Proximal Policy Optimization (PPO) based Reinforcement Learning with Human Feedback (RLHF). However, empirical evaluations consistently reveal suboptimal…

Machine Learning · Computer Science 2025-03-03 Qinwei Ma , Jingzhe Shi , Can Jin , Jenq-Neng Hwang , Serge Belongie , Lei Li

In the last few decades, several novel algorithms have been designed for finding critical points on PES and the minimum energy paths connecting them. This has led to considerably improve our understanding of reaction mechanisms and kinetics…

Computational Engineering, Finance, and Science · Computer Science 2024-10-30 Sandra Liz Simon , Nitin Kaistha , Vishal Agarwal

Peptide vaccines are growing in significance for fighting diverse diseases. Machine learning has improved the identification of peptides that can trigger immune responses, and the main challenge of peptide vaccine design now lies in…

Neural and Evolutionary Computing · Computer Science 2024-06-11 Dan-Xuan Liu , Yi-Heng Xu , Chao Qian
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