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Drug-Drug Interactions (DDIs) significantly influence therapeutic efficacy and patient safety. As experimental discovery is resource-intensive and time-consuming, efficient computational methodologies have become essential. The predominant…

Machine Learning · Computer Science 2026-02-03 Xinmo Jin , Bowen Fan , Xunkai Li , Henan Sun , YuXin Zeng , Zekai Chen , Yuxuan Sun , Jia Li , Qiangqiang Dai , Hongchao Qin , Rong-Hua Li , Guoren Wang

Existing benchmarks for evaluating foundation models mainly focus on single-document, text-only tasks. However, they often fail to fully capture the complexity of research workflows, which typically involve interpreting non-textual data and…

Computation and Language · Computer Science 2024-11-07 Chuhan Li , Ziyao Shangguan , Yilun Zhao , Deyuan Li , Yixin Liu , Arman Cohan

Organizations handling sensitive documents face a critical dilemma: adopt cloud-based AI systems that offer powerful question-answering capabilities but compromise data privacy, or maintain local processing that ensures security but…

Computation and Language · Computer Science 2025-12-01 Paolo Astrino

RAG-based QA has emerged as a powerful method for processing long industrial documents. However, conventional text chunking approaches often neglect complex and long industrial document structures, causing information loss and reduced…

Artificial Intelligence · Computer Science 2026-04-15 Joongmin Shin , Chanjun Park , Jeongbae Park , Jaehyung Seo , Heuiseok Lim

Recent advances in the healthcare industry have led to an abundance of unstructured data, making it challenging to perform tasks such as efficient and accurate information retrieval at scale. Our work offers an all-in-one scalable solution…

Information Retrieval · Computer Science 2023-02-15 Shreya Saxena , Raj Sangani , Siva Prasad , Shubham Kumar , Mihir Athale , Rohan Awhad , Vishal Vaddina

Data from clinical real-world settings is characterized by variability in quality, machine-type, setting, and source. One of the primary goals of medical computer vision is to develop and validate artificial intelligence (AI) based…

With advanced imaging, sequencing, and profiling technologies, multiple omics data become increasingly available and hold promises for many healthcare applications such as cancer diagnosis and treatment. Multimodal learning for integrative…

Genomics · Quantitative Biology 2022-12-20 Sina Tabakhi , Mohammod Naimul Islam Suvon , Pegah Ahadian , Haiping Lu

Large-scale multimodal models achieve strong results on tasks like Visual Question Answering (VQA), but they are often limited when queries require cultural and visual information, everyday knowledge, particularly in low-resource and…

Document AI is a growing research field that focuses on the comprehension and extraction of information from scanned and digital documents to make everyday business operations more efficient. Numerous downstream tasks and datasets have been…

Computation and Language · Computer Science 2024-01-29 Ahmed Masry , Amir Hajian

Understanding the interaction between different drugs (drug-drug interaction or DDI) is critical for ensuring patient safety and optimizing therapeutic outcomes. Existing DDI datasets primarily focus on textual information, overlooking…

Machine Learning · Computer Science 2025-06-03 Tung-Lam Ngo , Ba-Hoang Tran , Duy-Cat Can , Trung-Hieu Do , Oliver Y. Chén , Hoang-Quynh Le

Biomedical evidence synthesis relies on accurate extraction of methodological, laboratory, and outcome variables from full-text research articles, yet these variables are embedded in complex scientific PDFs that make manual abstraction…

Computation and Language · Computer Science 2026-01-22 Pouria Mortezaagha , Joseph Shaw , Bowen Sun , Arya Rahgozar

We introduce LongDA, a data analysis benchmark for evaluating LLM-based agents under documentation-intensive analytical workflows. In contrast to existing benchmarks that assume well-specified schemas and inputs, LongDA targets real-world…

Digital Libraries · Computer Science 2026-01-13 Yiyang Li , Zheyuan Zhang , Tianyi Ma , Zehong Wang , Keerthiram Murugesan , Chuxu Zhang , Yanfang Ye

Organizational knowledge used by AI agents typically lacks epistemic structure: retrieval systems surface semantically relevant content without distinguishing binding decisions from abandoned hypotheses, contested claims from settled ones,…

Artificial Intelligence · Computer Science 2026-05-25 Federico Bottino , Carlo Ferrero , Nicholas Dosio , Pierfrancesco Beneventano

In emergency situations, every second counts. The deployment of Large Language Models (LLMs) in time-sensitive, low or zero-connectivity environments remains limited. Current models are computationally intensive and unsuitable for low-tier…

Computation and Language · Computer Science 2025-11-04 Saiyma Sittul Muna , Rezwan Islam Salvi , Mushfiqur Rahman Mushfique , Ajwad Abrar

Vision-threatening eye diseases pose a major global health burden, with timely diagnosis limited by workforce shortages and restricted access to specialized care. While multimodal large language models (MLLMs) show promise for medical image…

We introduce RJUA-QA, a novel medical dataset for question answering (QA) and reasoning with clinical evidence, contributing to bridge the gap between general large language models (LLMs) and medical-specific LLM applications. RJUA-QA is…

Recent advancements in Large Language Models (LLMs) and Large Multi-modal Models (LMMs) have shown potential in various medical applications, such as Intelligent Medical Diagnosis. Although impressive results have been achieved, we find…

Despite the excitement behind biomedical artificial intelligence (AI), access to high-quality, diverse, and large-scale data - the foundation for modern AI systems - is still a bottleneck to unlocking its full potential. To address this…

Social media platforms have become valuable tools for understanding public health challenges by offering insights into patient behaviors, medication use, and mental health issues. However, analyzing such data remains difficult due to the…

Social and Information Networks · Computer Science 2025-08-15 Muhammad Ahmad , Fida Ullah , Muhammad Usman , Ildar Batyrshin , Grigori Sidorov