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In this paper, we propose a computational framework for 3D volume reconstruction from 2D histological slices using registration algorithms in feature space. To improve the quality of reconstructed 3D volume, first, intensity variations in…

Computer Vision and Pattern Recognition · Computer Science 2009-07-21 Ulas Bagci , Li Bai

High-resolution 3D medical image generation remains challenging because fully volumetric models are computationally expensive, while efficient 2D slice generators often fail to preserve anatomical consistency across the third dimension. We…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Xinhe Zhang , Yuyang Zhang , Pengfei Jin , Arnau Marin-Llobet , Na Li , Quanzheng Li

Neuropathological analyses benefit from spatially precise volumetric reconstructions that enhance anatomical delineation and improve morphometric accuracy. Our prior work has shown the feasibility of reconstructing 3D brain volumes from 2D…

Three-dimensional (3D) imaging techniques appeal to a broad range of scientific and industrial applications. Typically, projection slice theorem enables multiple two-dimensional (2D) projections of an object to be combined in the Fourier…

Optics · Physics 2013-11-19 Leigh S. Martin , Chien-Chun Chen , Jianwei Miao

Volumetric biomedical microscopy has the potential to increase the diagnostic information extracted from clinical tissue specimens and improve the diagnostic accuracy of both human pathologists and computational pathology models.…

Image and Video Processing · Electrical Eng. & Systems 2024-04-16 Cheng Jiang , Alexander Gedeon , Yiwei Lyu , Eric Landgraf , Yufeng Zhang , Xinhai Hou , Akhil Kondepudi , Asadur Chowdury , Honglak Lee , Todd Hollon

Recently 3D volumetric organ segmentation attracts much research interest in medical image analysis due to its significance in computer aided diagnosis. This paper aims to address the pancreas segmentation task in 3D computed tomography…

Image and Video Processing · Electrical Eng. & Systems 2019-12-03 Chaowei Fang , Guanbin Li , Chengwei Pan , Yiming Li , Yizhou Yu

We introduce multi-slice reasoning, a new notion for single-view 3D reconstruction which challenges the current and prevailing belief that multi-view synthesis is the most natural conduit between single-view and 3D. Our key observation is…

Computer Vision and Pattern Recognition · Computer Science 2023-12-13 Yizhi Wang , Wallace Lira , Wenqi Wang , Ali Mahdavi-Amiri , Hao Zhang

Many recent medical segmentation systems rely on powerful deep learning models to solve highly specific tasks. To maximize performance, it is standard practice to evaluate numerous pipelines with varying model topologies, optimization…

Machine Learning · Computer Science 2019-11-06 Mathias Perslev , Erik Bjørnager Dam , Akshay Pai , Christian Igel

State-of-the-art 2D image compression schemes rely on the power of convolutional neural networks (CNNs). Although CNNs offer promising perspectives for 2D image compression, extending such models to omnidirectional images is not…

Image and Video Processing · Electrical Eng. & Systems 2022-09-21 Navid Mahmoudian Bidgoli , Roberto G. de A. Azevedo , Thomas Maugey , Aline Roumy , Pascal Frossard

This study explores the use of deep learning techniques for analyzing lung Computed Tomography (CT) images. Classic deep learning approaches face challenges with varying slice counts and resolutions in CT images, a diversity arising from…

Image and Video Processing · Electrical Eng. & Systems 2024-03-19 Chih-Chung Hsu , Chia-Ming Lee , Yang Fan Chiang , Yi-Shiuan Chou , Chih-Yu Jiang , Shen-Chieh Tai , Chi-Han Tsai

Quantitative cancer image analysis relies on the accurate delineation of tumours, a very specialised and time-consuming task. For this reason, methods for automated segmentation of tumours in medical imaging have been extensively developed…

Image and Video Processing · Electrical Eng. & Systems 2022-12-07 Saúl Alonso-Monsalve , Leigh H. Whitehead , Adam Aurisano , Lorena Escudero Sanchez

A large portion of volumetric medical data, especially magnetic resonance imaging (MRI) data, is anisotropic, as the through-plane resolution is typically much lower than the in-plane resolution. Both 3D and purely 2D deep learning-based…

Image and Video Processing · Electrical Eng. & Systems 2023-11-29 Alex Ling Yu Hung , Haoxin Zheng , Kai Zhao , Xiaoxi Du , Kaifeng Pang , Qi Miao , Steven S. Raman , Demetri Terzopoulos , Kyunghyun Sung

Structural magnetic resonance imaging (MRI) has been widely utilized for analysis and diagnosis of brain diseases. Automatic segmentation of brain tumors is a challenging task for computer-aided diagnosis due to low-tissue contrast in the…

Image and Video Processing · Electrical Eng. & Systems 2020-11-22 Mohammad Hamghalam , Baiying Lei , Tianfu Wang

Foundation models for image segmentation have shown strong generalization in natural images, yet their applicability to 3D medical imaging remains limited. In this work, we study the zero-shot use of Segment Anything Model 2 (SAM2) for…

Computer Vision and Pattern Recognition · Computer Science 2026-03-25 Miquel Lopez Escoriza , Pau Amargant Alvarez

This paper addresses the challenge of 3D instance segmentation by simultaneously leveraging 3D geometric and multi-view image information. Many previous works have applied deep learning techniques to 3D point clouds for instance…

Computer Vision and Pattern Recognition · Computer Science 2024-08-05 Haoyu Guo , He Zhu , Sida Peng , Yuang Wang , Yujun Shen , Ruizhen Hu , Xiaowei Zhou

High-dimensional structural MRI (sMRI) images are widely used for Alzheimer's Disease (AD) diagnosis. Most existing methods for sMRI representation learning rely on 3D architectures (e.g., 3D CNNs), slice-wise feature extraction with late…

Computer Vision and Pattern Recognition · Computer Science 2026-01-30 Dexuan Ding , Ciyuan Peng , Endrowednes Kuantama , Jingcai Guo , Jia Wu , Jian Yang , Amin Beheshti , Ming-Hsuan Yang , Yuankai Qi

Feed-forward 3D Gaussian splatting (3DGS) models have gained significant popularity due to their ability to generate scenes immediately without needing per-scene optimization. Although omnidirectional images are becoming more popular since…

Computer Vision and Pattern Recognition · Computer Science 2025-03-28 Suyoung Lee , Jaeyoung Chung , Kihoon Kim , Jaeyoo Huh , Gunhee Lee , Minsoo Lee , Kyoung Mu Lee

Although deep neural networks have been a dominant method for many 2D vision tasks, it is still challenging to apply them to 3D tasks, such as medical image segmentation, due to the limited amount of annotated 3D data and limited…

Computer Vision and Pattern Recognition · Computer Science 2020-11-02 Yingwei Li , Zhuotun Zhu , Yuyin Zhou , Yingda Xia , Wei Shen , Elliot K. Fishman , Alan L. Yuille

Segmentation of anatomical structures and pathological regions in medical images is essential for modern clinical diagnosis, disease research, and treatment planning. While significant advancements have been made in deep learning-based…

Computer Vision and Pattern Recognition · Computer Science 2025-02-18 Taha Koleilat , Hojat Asgariandehkordi , Hassan Rivaz , Yiming Xiao

With the growing volume of CT examinations, there is an increasing demand for automated tools such as organ segmentation, abnormality detection, and report generation to support radiologists in managing their clinical workload. Multi-label…

Computer Vision and Pattern Recognition · Computer Science 2026-02-16 Theo Di Piazza , Carole Lazarus , Olivier Nempont , Loic Boussel