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Interactive computing notebooks, such as Jupyter notebooks, have become a popular tool for developing and improving data-driven models. Such notebooks tend to be executed either in the user's own machine or in a cloud environment, having…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-02 Renato L. F. Cunha , Lucas V. Real , Renan Souza , Bruno Silva , Marco A. S. Netto

Computational reproducibility is fundamental to trustworthy science, yet remains difficult to achieve in practice across various research workflows, including Jupyter notebooks published alongside scholarly articles. Environment drift,…

Software Engineering · Computer Science 2026-04-02 Sheeba Samuel , Daniel Mietchen , Hemanta Lo , Martin Gaedke

Life sciences research depends heavily on open-source academic software, yet many tools remain underused due to practical barriers. These include installation requirements that hinder adoption and limited developer resources for software…

Producing high-quality code across multiple programming languages is increasingly important as today's software systems are built on heterogeneous stacks. Large language models (LLMs) have advanced the state of automated programming, yet…

Large scale analysis of source code, and in particular scientific source code, holds the promise of better understanding the data science process, identifying analytical best practices, and providing insights to the builders of scientific…

Machine Learning · Computer Science 2020-09-01 Ge Zhang , Mike A. Merrill , Yang Liu , Jeffrey Heer , Tim Althoff

LLM-based coding agents are increasingly used to generate code, tests, and documentation. Still, their outputs can be plausible yet misaligned with developer intent and provide limited evidence for review in evolving projects. This limits…

Software Engineering · Computer Science 2026-04-14 Ragib Shahariar Ayon

Recent advances in code agents have enabled automated software development at the project level, supported by large language models (LLMs). However, existing benchmarks for code agent evaluation face two major limitations. First, creating…

Software Engineering · Computer Science 2026-03-24 Lingyue Fu , Bolun Zhang , Hao Guan , Yaoming Zhu , Lin Qiu , Weiwen Liu , Xuezhi Cao , Xunliang Cai , Weinan Zhang , Yong Yu

Jupyter has become the go-to platform for developing data applications but data and security concerns, especially when dealing with healthcare, have become paramount for many institutions and applications dealing with sensitive information.…

Cryptography and Security · Computer Science 2020-06-03 Haw-minn Lu , Adrian Kwong , Jose Unpingco

Programmers frequently engage with machine learning tutorials in computational notebooks and have been adopting code generation technologies based on large language models (LLMs). However, they encounter difficulties in understanding and…

Human-Computer Interaction · Computer Science 2024-07-15 Ruijia Cheng , Titus Barik , Alan Leung , Fred Hohman , Jeffrey Nichols

While Large Language Models (LLMs) have catalyzed breakthroughs in automated code generation, Small Language Models (SLMs) often encounter reasoning bottlenecks and failure loops when addressing complex logical requirements. To overcome…

Software Engineering · Computer Science 2026-01-30 Haoji Zhang , Yuzhe Li , Zhenqiang Liu , Chenyang Liu , Shenyang Zhang , Yi Zhou

With the goal of identifying common practices in data science projects, this paper proposes a framework for logging and understanding incremental code executions in Jupyter notebooks. This framework aims to allow reasoning about how…

Human-Computer Interaction · Computer Science 2024-05-29 Jinjin Zhao , Avidgor Gal , Sanjay Krishnan

AI-powered code assistants are widely used to generate code completions, significantly boosting developer productivity. However, these tools typically present suggestions without explaining their rationale, leaving their decision-making…

Human-Computer Interaction · Computer Science 2025-09-23 Runlong Ye , Zeling Zhang , Boushra Almazroua , Michael Liut

In software development environments, code quality is crucial. This study aims to assist Machine Learning (ML) engineers in enhancing their code by identifying and correcting Data Leakage issues within their models. Data Leakage occurs when…

Software Engineering · Computer Science 2025-09-22 Owen Truong , Terrence Zhang , Arnav Marchareddy , Ryan Lee , Jeffery Busold , Michael Socas , Eman Abdullah AlOmar

Computational notebooks, such as Jupyter Notebook, have become data scientists' de facto programming environments. Many visualization researchers and practitioners have developed interactive visualization tools that support notebooks, yet…

Human-Computer Interaction · Computer Science 2024-04-01 Zijie J. Wang , David Munechika , Seongmin Lee , Duen Horng Chau

Generative AI faces many challenges when entering the product design workflow, such as interface usability and interaction patterns. Therefore, based on design thinking and design process, we developed the DesignGPT multi-agent…

Artificial Intelligence · Computer Science 2023-11-21 Shiying Ding , Xinyi Chen , Yan Fang , Wenrui Liu , Yiwu Qiu , Chunlei Chai

Automating the transformation of user interface (UI) designs into front-end code holds significant promise for accelerating software development and democratizing design workflows. While multimodal large language models (MLLMs) can…

Computer Vision and Pattern Recognition · Computer Science 2025-10-21 Yilei Jiang , Yaozhi Zheng , Yuxuan Wan , Jiaming Han , Qunzhong Wang , Michael R. Lyu , Xiangyu Yue

Large Language Models (LLMs) have demonstrated considerable potential in improving coding education by providing support for code writing, explanation, and debugging. However, existing LLM-based approaches generally fail to assess students'…

Multiagent Systems · Computer Science 2025-07-21 Jianing Zhao , Peng Gao , Jiannong Cao , Zhiyuan Wen , Chen Chen , Jianing Yin , Ruosong Yang , Bo Yuan

Automated paper reproduction has emerged as a promising approach to accelerate scientific research, employing multi-step workflow frameworks to systematically convert academic papers into executable code. However, existing frameworks often…

Artificial Intelligence · Computer Science 2025-12-03 Zijie Lin , Qilin Cai , Liang Shen , Mingjun Xiao

Reproducibility of computational studies is a hallmark of scientific methodology. It enables researchers to build with confidence on the methods and findings of others, reuse and extend computational pipelines, and thereby drive scientific…

Reproducibility is a core requirement of modern scientific research. For computational research, reproducibility means that code should produce the same results, even when run on different systems. A standard approach to ensuring…

Other Computer Science · Computer Science 2023-10-03 Paxton C. Fitzpatrick , Jeremy R. Manning